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> Protein (NX_A0AVF1)
Protein (NX_A0AVF1)
Protein
Gene SymbolTTC26 to neXtProt (NX_A0AVF1)
DescriptionIntraflagellar transport protein 56
Chromosome7
Location7q34 (138818490 ~ 138876732) to Ensembl
Sequene Features : Isoforms 3, Variants 61, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.cilium assembly
.intraciliary transport
.protein transport
  + 2 more...
.N/A .ciliary tip
.primary cilium
.ciliary basal body
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 61 1
2014-09-19protein level
3 41 1
2014-05-27protein level
3 41 1
2014-02-25protein level
3 41 1
2013-12-09protein level
3 33 1
2013-11-01protein level
3 32 1
2013-09-12protein level
3 32 1
2013-08-17protein level
3 32 1
2013-07-15protein level
3 21 0
2013-06-11protein level
3 21 0
2013-02-12protein level
3 9 0
2012-12-20protein level
3 10 0
2012-10-30protein level
2 14 0
2012-10-07protein level
2 14 0
2012-08-24protein level
2 14 0
2012-07-28protein level
2 14 0
2012-06-08protein level
2 16 0
2012-05-07protein level
2 14 0
2012-04-10protein level
1 13 0
2012-01-13protein level
1 11 0
2011-12-20protein level
1 11 0
2011-11-11protein level
1 11 0
2011-08-23transcript level
1 11 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_A0AVF1-1
0 28 0 64136.2353
NX_A0AVF1-2
0 24 0 56316.2204
NX_A0AVF1-3
1 25 0 60429.4827
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bladder33
bone13
bone marrow41
brain16
connective tissue13
embryonic tissue9
esophagus49
eye9
intestine8
liver29
lung11
lymph node22
mammary gland33
muscle9
ovary9
pancreas4
pharynx73
placenta10
skin18
testis94
thymus12
thyroid21
trachea96
uterus8
vascular19
Health State
TissuesTPM*
normal17
breast (mammary gland) tumor42
chondrosarcoma24
colorectal tumor8
esophageal tumor57
germ cell tumor34
glioma27
head and neck tumor7
liver tumor31
ovarian tumor13
primitive neuroectodermal tumor of the CNS39
retinoblastoma21
skin tumor15
soft tissue/muscle tissue tumor7
uterine tumor11
Developmental Stage
TissuesTPM*
adult1
fetus3
juvenile89
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue2.3
adrenal gland3.5
appendix2.6
bone marrow1.9
cerebral cortex1.4
colon1.9
esophagus2.6
gallbladder3.6
heart muscle1.6
kidney4.3
lung4.1
lymph node2.3
ovary5
placenta2.2
prostate2.9
salivary gland1.9
skin1.7
spleen1.7
stomach2.1
testis14.9
thyroid gland5.6
urinary bladder3.4
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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