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> Protein (NX_A2A3K4)
Protein (NX_A2A3K4)
Protein
Gene SymbolPTPDC1 to neXtProt (NX_A2A3K4)
DescriptionProtein tyrosine phosphatase domain-containing protein 1
Chromosome9
Location9q22.32 (96793076 ~ 96872138) to Ensembl
Sequene Features : Isoforms 2, Variants 102, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.cell projection organization .protein tyrosine/serine/threonine phosphatase activity
.protein tyrosine phosphatase activity
.nucleoplasm
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 102 3
2014-09-19protein level
2 85 3
2014-05-27protein level
2 84 3
2014-02-25protein level
2 84 3
2013-12-09protein level
2 66 3
2013-11-01protein level
2 63 3
2013-09-12protein level
2 63 3
2013-08-17protein level
2 63 3
2013-07-15protein level
2 50 3
2013-06-11protein level
2 50 3
2013-02-12transcript level
2 27 0
2012-12-20transcript level
2 27 0
2012-10-30transcript level
2 32 0
2012-10-07transcript level
2 32 0
2012-08-24transcript level
2 30 0
2012-07-28transcript level
2 29 0
2012-06-08transcript level
2 32 0
2012-05-07transcript level
2 26 0
2012-04-10transcript level
2 26 0
2012-01-13transcript level
2 12 0
2011-12-20transcript level
2 12 0
2011-11-11transcript level
2 12 0
2011-08-23transcript level
2 12 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_A2A3K4-1
2 39 0 84402.5691
NX_A2A3K4-2
6 39 0 90085.7074
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bone41
brain42
connective tissue13
embryonic tissue9
intestine4
kidney9
lung8
lymph node11
mammary gland13
mouth30
ovary9
pancreas4
placenta10
prostate5
skin18
testis39
uterus12
Health State
TissuesTPM*
normal19
chondrosarcoma36
gastrointestinal tumor8
germ cell tumor7
head and neck tumor14
kidney tumor14
lymphoma13
non-neoplasia51
pancreatic tumor9
skin tumor31
soft tissue/muscle tissue tumor15
Developmental Stage
TissuesTPM*
adult11
embryoid body14
fetus17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue3.7
adrenal gland7.7
appendix3.2
cerebral cortex5.2
colon3
duodenum1.7
esophagus2.8
gallbladder3.1
heart muscle4.8
kidney2.8
lung4.3
lymph node2.6
ovary3.3
pancreas4.2
placenta1.8
prostate3.4
salivary gland2
skin3.6
small intestine2.1
spleen1.9
stomach4.2
testis10.5
thyroid gland3.2
urinary bladder3.7
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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