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> Protein (NX_A2IDD5)
Protein (NX_A2IDD5)
Protein
Gene SymbolCCDC78 to neXtProt (NX_A2IDD5)
DescriptionCoiled-coil domain-containing protein 78
Chromosome16
Location16p13.3 (772582 ~ 776954) to Ensembl
Sequene Features : Isoforms 6, Variants 72, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.de novo centriole assembly
.cell projection organization
.skeletal muscle contraction
.N/A .deuterosome
.perinuclear region of cytoplasm
.sarcolemma
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
6 72 0
2014-09-19protein level
6 62 0
2014-05-27transcript level
6 61 0
2014-02-25transcript level
6 60 0
2013-12-09transcript level
6 41 0
2013-11-01transcript level
6 41 0
2013-09-12transcript level
6 41 0
2013-08-17transcript level
6 41 0
2013-07-15transcript level
6 32 0
2013-06-11transcript level
6 32 0
2013-02-12transcript level
6 25 0
2012-12-20transcript level
6 25 0
2012-10-30transcript level
6 29 0
2012-10-07transcript level
6 29 0
2012-08-24transcript level
6 26 0
2012-07-28transcript level
6 27 0
2012-06-08transcript level
6 29 0
2012-05-07transcript level
6 31 0
2012-04-10transcript level
6 31 0
2012-01-13transcript level
6 9 0
2011-12-20transcript level
6 9 0
2011-11-11transcript level
6 9 0
2011-08-23transcript level
6 9 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_A2IDD5-1
10 9 0 48491.6777
NX_A2IDD5-2
0 9 0 20874.6548
NX_A2IDD5-3
0 11 0 29102.5347
NX_A2IDD5-4
2 8 0 26516.149
NX_A2IDD5-5
4 11 0 36657.339
NX_A2IDD5-6
0 10 0 27826.9638
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
brain6
connective tissue6
eye9
kidney4
liver4
lung26
lymph node11
prostate10
stomach41
thymus12
trachea135
uterus17
Health State
TissuesTPM*
normal5
chondrosarcoma12
gastrointestinal tumor16
glioma9
leukemia10
liver tumor10
lung tumor9
non-neoplasia10
primitive neuroectodermal tumor of the CNS23
prostate cancer19
uterine tumor44
Developmental Stage
TissuesTPM*
adult5
fetus5
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adrenal gland3.6
appendix2.6
bone marrow2
cerebral cortex3.3
gallbladder1.1
lung12.8
lymph node4.5
prostate1.2
salivary gland1.4
small intestine1.2
spleen3.8
stomach2
testis1.8
urinary bladder2.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*614666, gene) Coiled-coil domain-containing protein 78; CCDC78OMIM
2(#614807, phenotype) Myopathy, centronuclear, 4; CNM4OMIM


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