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> Protein (NX_O00148)
Protein (NX_O00148)
Protein
Gene SymbolDDX39A to neXtProt (NX_O00148)
DescriptionATP-dependent RNA helicase DDX39A
Chromosome19
Location19p13.12 (14519631 ~ 14530192) to Ensembl
Sequene Features : Isoforms 2, Variants 35, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.RNA secondary structure unwinding
.regulation of gene expression
.cellular response to DNA damage stimulus
  + 2 more...
.poly(A) RNA binding
.ATP binding
.ATP-dependent RNA helicase activity
.membrane
.cytoplasm
.nucleolus
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 35 6
2014-09-19protein level
2 23 6
2014-05-27protein level
2 23 14
2014-02-25protein level
2 22 14
2013-12-09protein level
2 16 14
2013-11-01protein level
2 14 11
2013-09-12protein level
2 14 11
2013-08-17protein level
2 14 11
2013-07-15protein level
1 10 6
2013-06-11protein level
1 10 6
2013-02-12protein level
1 3 7
2012-12-20protein level
1 3 7
2012-10-30protein level
1 5 7
2012-10-07protein level
1 5 7
2012-08-24protein level
1 3 7
2012-07-28protein level
1 3 7
2012-06-08protein level
1 9 7
2012-05-07protein level
1 9 7
2012-04-10protein level
1 9 7
2012-01-13protein level
1 8 7
2011-12-20protein level
1 8 7
2011-11-11protein level
1 8 6
2011-08-23protein level
1 8 6
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_O00148-1
4 7 9 49097.816
NX_O00148-2
1 7 6 36553.378
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-348253,EBI-347495 SARNP  
  .regulation of translation
.mRNA export from nucleus
.regulation of transcription, DNA-templated
.transcription, DNA-templated
.poly(A) RNA binding
.DNA binding
.intracellular membrane-bounded organelle
.nuclear speck
.nucleoplasm
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue155
adrenal gland91
ascites351
bladder33
blood171
bone83
bone marrow20
brain79
cervix185
connective tissue33
embryonic tissue103
esophagus99
eye114
heart67
intestine90
kidney71
larynx170
liver87
lung241
lymph519
lymph node133
mammary gland19
mouth45
muscle75
nerve64
ovary98
pancreas46
parathyroid48
pharynx343
placenta102
prostate36
salivary gland49
skin118
spleen149
stomach62
testis363
thymus313
tonsil352
trachea38
uterus133
vascular58
Health State
TissuesTPM*
normal82
adrenal tumor79
breast (mammary gland) tumor32
cervical tumor173
chondrosarcoma72
colorectal tumor62
esophageal tumor115
gastrointestinal tumor185
germ cell tumor121
glioma186
head and neck tumor74
kidney tumor145
leukemia158
liver tumor145
lung tumor642
lymphoma373
non-neoplasia31
ovarian tumor91
pancreatic tumor66
primitive neuroectodermal tumor of the CNS196
prostate cancer38
retinoblastoma258
skin tumor199
soft tissue/muscle tissue tumor111
uterine tumor188
Developmental Stage
TissuesTPM*
adult79
embryoid body28
blastocyst97
neonate32
fetus34
infant127
juvenile107
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue29.6
adrenal gland20
appendix65.7
bone marrow182.2
cerebral cortex15.7
colon33.1
duodenum37.7
esophagus29.7
gallbladder27.8
heart muscle18.4
kidney17.8
liver11.6
lung28.6
lymph node97.8
ovary14.1
pancreas11
placenta29.5
prostate21.6
salivary gland18.4
skin36.3
small intestine34.6
spleen66.2
stomach37.7
testis124
thyroid gland20.5
urinary bladder36.6
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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