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> Protein (NX_O15126)
Protein (NX_O15126)
Protein
Gene SymbolSCAMP1 to neXtProt (NX_O15126)
DescriptionSecretory carrier-associated membrane protein 1
Chromosome5
Location5q14.1 (77656339 ~ 77776562) to Ensembl
Sequene Features : Isoforms 2, Variants 5, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.protein transport
.endocytosis
.post-Golgi vesicle-mediated transport
.exocytosis
.N/A .recycling endosome membrane
.zymogen granule membrane
.synaptic vesicle membrane
  + 3 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 5 5
2014-09-19protein level
2 5 5
2014-05-27protein level
2 5 5
2014-02-25protein level
2 5 5
2013-12-09protein level
2 1 5
2013-11-01protein level
2 1 3
2013-09-12protein level
2 1 3
2013-08-17protein level
2 0 3
2013-07-15protein level
2 0 0
2013-06-11protein level
2 0 0
2013-02-12protein level
2 0 0
2012-12-20protein level
2 0 0
2012-10-30protein level
2 0 0
2012-10-07protein level
2 0 0
2012-08-24protein level
2 0 0
2012-07-28protein level
2 0 0
2012-06-08protein level
2 5 0
2012-05-07protein level
2 5 0
2012-04-10protein level
2 5 0
2012-01-13protein level
2 5 0
2011-12-20protein level
2 5 0
2011-11-11protein level
2 5 0
2011-08-23protein level
2 5 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_O15126-1
6 8 0 37895.702
NX_O15126-2
0 8 0 18030.7873
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-954338,EBI-10172380 FAM208B  
  .N/A .N/A .cytoplasm
.nucleoplasm
.nucleus
2 EBI-954338,EBI-10182121 ZMIZ2  
  .positive regulation of transcription from RNA polymerase II promoter
.transcription, DNA-templated
.ligand-dependent nuclear receptor transcription coactivator activity
.zinc ion binding
.nuclear replication fork
.mitochondrion
.nucleoplasm
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue155
adrenal gland60
ascites50
bladder468
blood49
bone27
bone marrow61
brain170
cervix20
connective tissue46
embryonic tissue37
esophagus49
eye81
heart33
intestine38
kidney113
liver29
lung41
lymph22
lymph node77
mammary gland33
mouth151
muscle47
nerve64
ovary29
pancreas84
pharynx24
pituitary gland242
placenta67
prostate58
salivary gland49
skin33
spleen56
stomach10
testis68
thymus50
thyroid42
trachea308
uterus64
vascular77
Health State
TissuesTPM*
normal84
adrenal tumor158
bladder carcinoma739
breast (mammary gland) tumor21
cervical tumor28
chondrosarcoma24
colorectal tumor53
esophageal tumor57
gastrointestinal tumor33
germ cell tumor83
glioma18
head and neck tumor67
kidney tumor116
leukemia63
liver tumor41
lung tumor38
lymphoma13
non-neoplasia72
ovarian tumor39
pancreatic tumor85
primitive neuroectodermal tumor of the CNS39
prostate cancer48
retinoblastoma107
skin tumor15
soft tissue/muscle tissue tumor31
uterine tumor55
Developmental Stage
TissuesTPM*
adult48
embryoid body28
blastocyst48
fetus82
infant127
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue14.3
adrenal gland21.1
appendix11.9
bone marrow5.3
cerebral cortex41.3
colon18.2
duodenum12.6
esophagus23.8
gallbladder19.4
heart muscle17.5
kidney21
liver9.8
lung15.6
lymph node12
ovary21.1
pancreas12.1
placenta16.8
prostate27.1
salivary gland21.1
skin13.2
small intestine14.6
spleen11.3
stomach22.4
testis13.9
thyroid gland37.3
urinary bladder28.7
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Disease
No.Disease DescriptionRef.
1(*606911, gene) Secretory carrier membrane protein 1; SCAMP1OMIM


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