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> Protein (NX_O15417)
Protein (NX_O15417)
Protein
Gene SymbolTNRC18 to neXtProt (NX_O15417)
DescriptionTrinucleotide repeat-containing gene 18 protein
Chromosome7
Location7p22.1 (5346421 ~ 5465045) to Ensembl
Sequene Features : Isoforms 3, Variants 219, PTMs 19 to neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.heterochromatin assembly
.chromatin silencing
.chromatin binding
.transcription regulatory region sequence-specific DNA binding
.nuclear membrane
.mitochondrion
.cytoplasm
  + 4 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 219 19
2014-09-19protein level
3 161 19
2014-05-27protein level
3 161 21
2014-02-25protein level
3 158 21
2013-12-09protein level
3 117 21
2013-11-01protein level
3 116 21
2013-09-12protein level
3 116 22
2013-08-17protein level
3 116 22
2013-07-15protein level
3 76 22
2013-06-11protein level
3 76 22
2013-02-12protein level
3 33 26
2012-12-20protein level
3 25 26
2012-10-30protein level
3 43 26
2012-10-07protein level
3 43 13
2012-08-24protein level
3 35 13
2012-07-28protein level
3 40 13
2012-06-08protein level
3 46 13
2012-05-07protein level
3 46 13
2012-04-10protein level
3 46 13
2012-01-13protein level
3 45 13
2011-12-20protein level
3 45 13
2011-11-11protein level
3 45 7
2011-08-23protein level
3 45 7
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_O15417-1
36 82 1 314325.099
NX_O15417-2
8 82 0 239349.8902
NX_O15417-3
4 8 0 43301.3444
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland30
ascites150
blood49
bone55
brain24
cervix82
connective tissue20
embryonic tissue84
esophagus49
eye62
intestine56
kidney9
larynx298
liver19
lung68
lymph22
lymph node66
mammary gland59
mouth15
muscle18
nerve128
ovary29
pancreas56
parathyroid194
pharynx24
placenta60
prostate42
skin56
spleen56
stomach94
testis29
thymus12
thyroid42
uterus51
vascular19
Health State
TissuesTPM*
normal49
bladder carcinoma113
breast (mammary gland) tumor75
cervical tumor86
chondrosarcoma48
colorectal tumor44
esophageal tumor57
gastrointestinal tumor135
germ cell tumor18
glioma93
head and neck tumor74
leukemia84
liver tumor20
lung tumor9
lymphoma13
non-neoplasia31
ovarian tumor13
primitive neuroectodermal tumor of the CNS7
prostate cancer38
skin tumor71
soft tissue/muscle tissue tumor23
uterine tumor110
Developmental Stage
TissuesTPM*
adult61
embryoid body57
blastocyst130
fetus80
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue22.7
adrenal gland12.9
appendix23
bone marrow25
cerebral cortex18.8
colon30.2
duodenum17.8
esophagus17.4
gallbladder20.3
heart muscle11
kidney27.9
liver12
lung25.9
lymph node13.3
ovary31.2
pancreas11.1
placenta26.5
prostate29.5
salivary gland16.2
skin19.2
small intestine18.3
spleen22.8
stomach23.7
testis22.8
thyroid gland19.6
urinary bladder21.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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