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> Protein (NX_O43617)
Protein (NX_O43617)
Protein
Gene SymbolTRAPPC3 to neXtProt (NX_O43617)
DescriptionTrafficking protein particle complex subunit 3
Chromosome1
Location1p34.3 (36602173 ~ 36615098) to Ensembl
Sequene Features : Isoforms 2, Variants 21, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.vesicle-mediated transport .N/A .Golgi apparatus
.endoplasmic reticulum
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 21 4
2014-09-19protein level
2 10 4
2014-05-27protein level
2 10 4
2014-02-25protein level
2 10 4
2013-12-09protein level
2 8 4
2013-11-01protein level
2 8 3
2013-09-12protein level
2 8 3
2013-08-17protein level
2 8 3
2013-07-15protein level
1 6 1
2013-06-11protein level
1 6 1
2013-02-12protein level
1 1 1
2012-12-20protein level
1 1 1
2012-10-30protein level
1 2 1
2012-10-07protein level
1 2 1
2012-08-24protein level
1 1 1
2012-07-28protein level
1 1 1
2012-06-08protein level
1 2 1
2012-05-07protein level
1 2 1
2012-04-10protein level
1 2 1
2012-01-13protein level
1 1 1
2011-12-20protein level
1 2 1
2011-11-11protein level
1 2 1
2011-08-23protein level
1 2 1
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_O43617-1
2 7 0 20261.0899
NX_O43617-2
0 7 0 14995.5666
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-743566,EBI-2857298 TRAPPC13  
  .N/A .N/A .N/A
2 EBI-743566,EBI-743573 TRAPPC6A  
  .vesicle-mediated transport .N/A .Golgi apparatus
.endoplasmic reticulum
3 EBI-743566,EBI-6160531 TRAPPC6B  
  .vesicle-mediated transport .N/A .Golgi apparatus
.endoplasmic reticulum
4 EBI-743566,EBI-742388 PLEKHF2  
  .protein transport .metal ion binding .early endosome membrane
.transport vesicle
.endoplasmic reticulum
5 EBI-743566,EBI-747601 TRAPPC2L  
  .ER to Golgi vesicle-mediated transport .N/A .perinuclear region of cytoplasm
.Golgi apparatus
.endoplasmic reticulum
.cytoplasm
6 EBI-743566,EBI-2820056 TRAPPC8  
  .nucleophagy
.protein localization to pre-autophagosomal structure
.CVT pathway
  + 3 more...
.N/A .TRAPPIII protein complex
.cytoplasmic vesicle
.pre-autophagosomal structure
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue233
adrenal gland121
ascites75
bladder33
blood40
bone69
brain37
cervix103
connective tissue13
embryonic tissue84
eye86
heart11
intestine47
kidney33
larynx340
liver48
lung53
lymph135
lymph node89
mammary gland46
mouth120
muscle47
nerve128
ovary88
pancreas42
parathyroid48
pituitary gland121
placenta70
prostate63
salivary gland148
skin47
spleen18
testis43
tonsil58
uterus47
vascular38
Health State
TissuesTPM*
normal39
adrenal tumor79
bladder carcinoma56
breast (mammary gland) tumor75
cervical tumor57
chondrosarcoma36
colorectal tumor53
gastrointestinal tumor50
germ cell tumor49
glioma83
head and neck tumor141
kidney tumor43
leukemia52
liver tumor83
lung tumor87
lymphoma138
non-neoplasia10
ovarian tumor65
pancreatic tumor19
primitive neuroectodermal tumor of the CNS15
prostate cancer38
retinoblastoma64
skin tumor55
soft tissue/muscle tissue tumor55
uterine tumor110
Developmental Stage
TissuesTPM*
adult56
embryoid body28
blastocyst130
fetus16
infant42
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue37.1
adrenal gland50.6
appendix33.8
bone marrow19.1
cerebral cortex25.9
colon40.9
duodenum33.5
esophagus44.7
gallbladder37.7
heart muscle34.9
kidney43.6
liver25.8
lung35.4
lymph node38.4
ovary25.8
pancreas21.2
placenta39.7
prostate37.4
salivary gland31.3
skin36.7
small intestine36.6
spleen34.3
stomach32.1
testis43.1
thyroid gland59.8
urinary bladder43.8
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*610955, gene) Trafficking protein particle complex, subunit 3; TRAPPC3OMIM


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