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> Protein (NX_O75127)
Protein (NX_O75127)
Protein
Gene SymbolPTCD1 to neXtProt (NX_O75127)
DescriptionPentatricopeptide repeat-containing protein 1, mitochondrial
Chromosome7
Location7q22.1 (99014362 ~ 99063787) to Ensembl
Sequene Features : Isoforms 1, Variants 47, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.tRNA 3'-end processing .poly(A) RNA binding
.tRNA binding
.mitochondrial matrix
.mitochondrion
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 47 3
2014-09-19protein level
1 86 3
2014-05-27protein level
1 86 4
2014-02-25protein level
1 47 3
2013-12-09protein level
1 29 3
2013-11-01protein level
1 29 0
2013-09-12protein level
1 29 0
2013-08-17protein level
1 29 0
2013-07-15protein level
1 29 0
2013-06-11protein level
1 29 0
2013-02-12protein level
1 29 0
2012-12-20protein level
1 28 0
2012-10-30protein level
1 30 0
2012-10-07protein level
1 30 0
2012-08-24protein level
1 30 0
2012-07-28protein level
1 30 0
2012-06-08protein level
1 31 0
2012-05-07protein level
1 31 0
2012-04-10protein level
1 34 0
2012-01-13protein level
1 17 0
2011-12-20protein level
1 15 0
2011-11-11protein level
1 15 0
2011-08-23protein level
1 15 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_O75127-1
33 0 0 78805.5486
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
ascites25
bladder66
blood32
bone13
bone marrow41
brain37
cervix20
connective tissue26
embryonic tissue4
intestine12
kidney14
liver4
lymph22
mammary gland13
mouth151
ovary19
placenta10
prostate5
spleen18
testis75
thymus75
trachea38
uterus12
vascular19
Health State
TissuesTPM*
normal17
breast (mammary gland) tumor53
cervical tumor28
chondrosarcoma36
colorectal tumor53
gastrointestinal tumor50
germ cell tumor68
glioma9
head and neck tumor7
kidney tumor14
leukemia21
liver tumor10
lymphoma27
non-neoplasia31
ovarian tumor13
primitive neuroectodermal tumor of the CNS15
uterine tumor11
Developmental Stage
TissuesTPM*
adult31
embryoid body28
blastocyst81
fetus17
juvenile17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue4.4
adrenal gland4.3
appendix5.5
bone marrow3.1
cerebral cortex4.6
colon4.4
duodenum5
esophagus6.4
gallbladder4.4
heart muscle4.9
kidney4.5
liver2.4
lung4.1
lymph node5.5
ovary5.2
pancreas2.1
placenta4.2
prostate6.7
salivary gland4.3
skin4.8
small intestine3.8
spleen5.5
stomach4.6
testis7
thyroid gland5
urinary bladder5.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*614774, gene) Pentatricopeptide repeat domain-containing protein 1; PTCD1OMIM


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