Home| Contact Us

HOME SEARCH STATISTICS
> Protein (NX_P09234)
Protein (NX_P09234)
Protein
Gene SymbolSNRPC to neXtProt (NX_P09234)
DescriptionU1 small nuclear ribonucleoprotein C
Chromosome6
Location6p21.31 (34725183 ~ 34741571) to Ensembl
Sequene Features : Isoforms 1, Variants 17, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.mRNA splicing, via spliceosome
.mRNA 5'-splice site recognition
.spliceosomal snRNP assembly
.poly(A) RNA binding
.protein homodimerization activity
.zinc ion binding
  + 2 more...
.U2-type prespliceosome
.Cajal body
.U1 snRNP
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 17 7
2014-09-19protein level
1 13 7
2014-05-27protein level
1 13 7
2014-02-25protein level
1 13 7
2013-12-09protein level
1 12 7
2013-11-01protein level
1 11 6
2013-09-12protein level
1 11 6
2013-08-17protein level
1 11 6
2013-07-15protein level
1 3 4
2013-06-11protein level
1 3 4
2013-02-12protein level
1 2 4
2012-12-20protein level
1 2 4
2012-10-30protein level
1 1 4
2012-10-07protein level
1 1 4
2012-08-24protein level
1 1 4
2012-07-28protein level
1 1 4
2012-06-08protein level
1 10 4
2012-05-07protein level
1 11 4
2012-04-10protein level
1 11 4
2012-01-13protein level
1 9 4
2011-12-20protein level
1 9 4
2011-11-11protein level
1 4 4
2011-08-23protein level
1 4 4
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_P09234-1
4 0 0 17381.19
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-766589,EBI-721525 RBM10  
  .RNA splicing
.mRNA processing
.poly(A) RNA binding
.identical protein binding
.protein complex binding
  + 2 more...
.nucleoplasm
.nucleus
2 EBI-766589,EBI-7705033 WDR83  
  .mRNA splicing, via spliceosome
.RNA splicing, via transesterification reactions
.N/A .catalytic step 2 spliceosome
.cytoplasm
.spliceosomal complex
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
ascites251
bladder33
blood40
bone55
bone marrow61
brain38
cervix144
connective tissue40
ear186
embryonic tissue103
eye81
heart145
intestine64
kidney47
larynx42
liver394
lung125
lymph45
lymph node77
mammary gland119
muscle37
ovary147
pancreas192
parathyroid339
pharynx24
pituitary gland181
placenta141
prostate79
skin128
spleen56
stomach73
testis25
thymus12
thyroid42
umbilical cord581
uterus129
vascular58
Health State
TissuesTPM*
normal84
bladder carcinoma56
breast (mammary gland) tumor75
cervical tumor115
chondrosarcoma144
colorectal tumor53
gastrointestinal tumor151
germ cell tumor64
glioma149
head and neck tumor22
kidney tumor58
leukemia84
liver tumor239
lung tumor87
lymphoma41
non-neoplasia51
ovarian tumor144
pancreatic tumor171
primitive neuroectodermal tumor of the CNS39
prostate cancer48
retinoblastoma193
skin tumor71
soft tissue/muscle tissue tumor111
uterine tumor88
Developmental Stage
TissuesTPM*
adult92
embryoid body128
blastocyst48
neonate257
fetus93
juvenile53
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue37
adrenal gland38
appendix49.8
bone marrow79.9
cerebral cortex27.2
colon50.6
duodenum46.9
esophagus45.3
gallbladder39.3
heart muscle92.7
kidney43.7
liver31.5
lung42.3
lymph node69.9
ovary47
pancreas26.6
placenta52.6
prostate39
salivary gland43.8
skin35.7
small intestine45.8
spleen37.2
stomach39.9
testis73.8
thyroid gland56.9
urinary bladder52.3
Tissues
TissuesExpression level
adrenal glandHigh
appendixMedium
bone marrowMedium
breastHigh
bronchusMedium
cerebellumHigh
cerebral cortexHigh
cervix, uterineHigh
colonHigh
duodenumMedium
endometrium 1Medium
endometrium 2Medium
epididymisHigh
esophagusMedium
fallopian tubeMedium
gallbladderHigh
heart muscleMedium
hippocampusMedium
kidneyHigh
lateral ventricleMedium
liverMedium
lungHigh
lymph nodeMedium
nasopharynxHigh
oral mucosaMedium
ovaryMedium
pancreasMedium
parathyroid glandMedium
placentaMedium
prostateHigh
rectumHigh
salivary glandMedium
seminal vesicleMedium
skeletal muscleMedium
skin 1Medium
skin 2Medium
small intestineHigh
smooth muscleMedium
soft tissue 1Medium
soft tissue 2Medium
spleenMedium
stomach 1High
stomach 2Medium
testisHigh
thyroid glandHigh
tonsilMedium
urinary bladderHigh
vaginaHigh
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*603522, gene) Small nuclear ribonucleoprotein polypeptide c; SNRPCOMIM


#424, YPRC/BPRC, Industry-University Research Center, Yonsei Univ., Seodaemun-gu, Seoul, Korea, 120-749
Tel: +82-2-2123-6626, Fax: +82-2-393-6589
2014-2019 (C) Yonsei Proteome Research Center