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> Protein (NX_P29558)
Protein (NX_P29558)
Protein
Gene SymbolRBMS1 to neXtProt (NX_P29558)
DescriptionRNA-binding motif, single-stranded-interacting protein 1
Chromosome2
Location2q24.2 (161128662 ~ 161350305) to Ensembl
Sequene Features : Isoforms 3, Variants 41, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.RNA processing
.DNA replication
.poly(A) RNA binding
.RNA binding
.single-stranded DNA binding
  + 2 more...
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 41 3
2014-09-19protein level
3 26 3
2014-05-27protein level
3 26 4
2014-02-25protein level
3 26 4
2013-12-09protein level
3 16 4
2013-11-01protein level
3 15 4
2013-09-12protein level
3 15 4
2013-08-17protein level
3 15 4
2013-07-15protein level
3 5 3
2013-06-11protein level
3 5 3
2013-02-12protein level
3 2 4
2012-12-20protein level
3 3 4
2012-10-30protein level
3 4 4
2012-10-07protein level
3 4 2
2012-08-24protein level
3 3 2
2012-07-28protein level
3 3 2
2012-06-08protein level
3 5 2
2012-05-07protein level
3 5 2
2012-04-10protein level
3 5 2
2012-01-13protein level
3 5 2
2011-12-20protein level
3 5 2
2011-11-11protein level
3 5 2
2011-08-23protein level
3 5 2
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_P29558-1
1 8 2 44476.7308
NX_P29558-2
1 8 2 44108.4785
NX_P29558-4
1 1 0 4629.2125
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-5462600,EBI-717422 TFCP2  
  .regulation of transcription from RNA polymerase II promoter
.transcription, DNA-templated
.sequence-specific DNA binding
.protein C-terminus binding
.sequence-specific DNA binding transcription factor activity
.DNA binding
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue310
adrenal gland30
bladder33
blood130
bone111
bone marrow41
brain27
cervix103
connective tissue87
ear62
embryonic tissue14
esophagus49
eye9
heart100
intestine30
kidney14
larynx85
liver77
lung2
lymph node122
mammary gland52
mouth60
muscle84
nerve64
ovary68
pancreas60
parathyroid48
placenta3
prostate10
salivary gland49
skin185
spleen74
stomach491
testis2
thymus12
thyroid21
tonsil58
uterus4
vascular58
Health State
TissuesTPM*
normal6
bladder carcinoma341
breast (mammary gland) tumor42
cervical tumor28
chondrosarcoma169
colorectal tumor8
esophageal tumor57
gastrointestinal tumor430
germ cell tumor3
glioma37
head and neck tumor59
kidney tumor87
leukemia127
liver tumor124
lung tumor58
non-neoplasia82
ovarian tumor65
pancreatic tumor38
primitive neuroectodermal tumor of the CNS47
prostate cancer9
skin tumor143
soft tissue/muscle tissue tumor7
uterine tumor11
Developmental Stage
TissuesTPM*
adult3
embryoid body14
blastocyst16
fetus12
juvenile17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue40.5
adrenal gland21.6
appendix39.2
bone marrow18.5
cerebral cortex4.6
colon13.1
duodenum10.2
esophagus23.7
gallbladder35
heart muscle23.1
kidney20.9
liver10.6
lung35.8
lymph node26.4
ovary34.8
pancreas3.6
placenta63.7
prostate18.7
salivary gland10.4
skin19.8
small intestine11
spleen34.7
stomach16.1
testis9.7
thyroid gland15.7
urinary bladder29.3
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*602310, gene) Rna-binding motif protein, single strand-interacting, 1; RBMS1OMIM


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