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> Protein (NX_P38159)
Protein (NX_P38159)
Protein
Gene SymbolRBMX to neXtProt (NX_P38159)
DescriptionRNA-binding motif protein, X chromosome
ChromosomeX
LocationXq26.3 (135930163 ~ 135962923) to Ensembl
Sequene Features : Isoforms 3, Variants 94, PTMs 17 to neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.cellular response to interleukin-1
.protein homooligomerization
.positive regulation of mRNA splicing, via spliceosome
  + 10 more...
.poly(A) RNA binding
.mRNA binding
.single-stranded RNA binding
  + 4 more...
.catalytic step 2 spliceosome
.extracellular exosome
.supraspliceosomal complex
  + 6 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 94 17
2014-09-19protein level
3 75 17
2014-05-27protein level
3 73 47
2014-02-25protein level
3 72 43
2013-12-09protein level
3 66 43
2013-11-01protein level
3 64 43
2013-09-12protein level
3 64 43
2013-08-17protein level
3 64 43
2013-07-15protein level
3 51 40
2013-06-11protein level
3 51 40
2013-02-12protein level
3 23 88
2012-12-20protein level
3 26 88
2012-10-30protein level
3 27 88
2012-10-07protein level
3 27 41
2012-08-24protein level
3 21 41
2012-07-28protein level
3 21 41
2012-06-08protein level
3 23 41
2012-05-07protein level
3 23 41
2012-04-10protein level
2 15 41
2012-01-13protein level
2 18 41
2011-12-20protein level
1 18 41
2011-11-11protein level
1 18 37
2011-08-23protein level
1 17 35
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_P38159-1
0 5 13 42306.2119
NX_P38159-2
0 5 12 40821.4748
NX_P38159-3
4 1 4 22157.3547
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-743526,EBI-607085 SNRPA  
  .gene expression
.RNA splicing
.mRNA splicing, via spliceosome
.poly(A) RNA binding
.snRNA binding
.RNA binding
.nucleotide binding
.cytoplasm
.nucleolus
.U1 snRNP
  + 2 more...
2 EBI-743526,EBI-8638511 RBMY1A1  
  .RNA splicing
.mRNA processing
.regulation of alternative mRNA splicing, via spliceosome
.mRNA binding
.nucleotide binding
.nucleus
3 EBI-743526,EBI-745579 CLK3  
  .protein autophosphorylation
.regulation of RNA splicing
.protein phosphorylation
.poly(A) RNA binding
.ATP binding
.protein tyrosine kinase activity
  + 2 more...
.intermediate filament cytoskeleton
.nuclear speck
.membrane
  + 3 more...
4 EBI-743526,EBI-304185 HNRNPK  
  .regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter
.positive regulation of receptor-mediated endocytosis
.positive regulation of transcription from RNA polymerase II promoter
  + 8 more...
.poly(A) RNA binding
.RNA binding
.single-stranded DNA binding
  + 2 more...
.catalytic step 2 spliceosome
.extracellular exosome
.cell projection
  + 7 more...
5 EBI-743526,EBI-2803328 PRR3  
  .N/A .metal ion binding
.poly(A) RNA binding
.N/A
6 EBI-743526,EBI-2949699 RBM3  
  .positive regulation of translation
.production of miRNAs involved in gene silencing by miRNA
.response to cold
  + 3 more...
.poly(A) RNA binding
.ribosomal large subunit binding
.RNA binding
.nucleotide binding
.dendrite
.cytoplasm
.nucleus
7 EBI-743526,EBI-538850 CIRBP  
  .mRNA stabilization
.positive regulation of translation
.stress granule assembly
  + 3 more...
.small ribosomal subunit rRNA binding
.poly(A) RNA binding
.translation repressor activity
  + 2 more...
.cytoplasmic stress granule
.cytoplasm
.nucleoplasm
.nucleus
8 EBI-743526,EBI-8642021 RBMY1F  
  .RNA splicing
.spermatogenesis
.mRNA processing
.RNA binding
.nucleotide binding
.nucleus
9 EBI-743526,EBI-742808 KHDRBS2  
  .regulation of transcription, DNA-templated
.transcription, DNA-templated
.poly(U) RNA binding
.poly(A) binding
.nucleus
10 EBI-743526,EBI-746778 MAGOHB  
  .mRNA transport
.RNA splicing
.mRNA processing
.poly(A) RNA binding .catalytic step 2 spliceosome
.exon-exon junction complex
11 EBI-743526,EBI-2889252 NABP1  
  .response to ionizing radiation
.mitotic cell cycle checkpoint
.cellular response to DNA damage stimulus
  + 2 more...
.RNA binding
.single-stranded DNA binding
.SOSS complex
.cytoplasm
.nucleoplasm
.nucleus
12 EBI-743526,EBI-1044593 APOBEC3C  
  .DNA demethylation
.defense response to virus
.innate immune response
  + 4 more...
.poly(A) RNA binding
.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
.zinc ion binding
.cytoplasm
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland60
ascites25
bladder33
blood32
bone139
bone marrow677
brain12
cervix20
connective tissue496
ear62
embryonic tissue14
esophagus1538
eye43
heart22
intestine51
kidney4
larynx170
liver19
lung8
lymph519
lymph node33
mammary gland85
mouth498
muscle18
nerve128
ovary59
pancreas18
parathyroid48
pharynx24
pituitary gland60
placenta17
prostate15
salivary gland197
skin23
spleen1385
stomach480
testis18
thymus12
thyroid193
tonsil293
trachea1042
umbilical cord72
uterus51
vascular19
Health State
TissuesTPM*
normal17
breast (mammary gland) tumor53
cervical tumor28
chondrosarcoma84
colorectal tumor79
esophageal tumor1739
gastrointestinal tumor8
germ cell tumor22
glioma27
head and neck tumor52
kidney tumor14
leukemia42
liver tumor20
lung tumor145
lymphoma13
non-neoplasia10
ovarian tumor78
pancreatic tumor9
primitive neuroectodermal tumor of the CNS15
prostate cancer28
retinoblastoma21
skin tumor263
soft tissue/muscle tissue tumor55
uterine tumor11
Developmental Stage
TissuesTPM*
adult43
embryoid body14
blastocyst16
neonate32
fetus14
infant5869
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue57.2
adrenal gland56.8
appendix79.9
bone marrow83.3
cerebral cortex41.8
colon65.1
duodenum62.6
esophagus51.2
gallbladder61.9
heart muscle44
kidney47.2
liver25.3
lung64.4
lymph node105
ovary170
pancreas24.6
placenta46.7
prostate60.9
salivary gland39.2
skin58.3
small intestine63.4
spleen79.2
stomach56.1
testis37.5
thyroid gland70
urinary bladder65.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*300199, gene) Rna-binding motif protein, x chromosome; RBMXOMIM


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