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> Protein (NX_P62314)
Protein (NX_P62314)
Protein
Gene SymbolSNRPD1 to neXtProt (NX_P62314)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Chromosome18
Location18q11.2 (19192228 ~ 19210417) to Ensembl
Sequene Features : Isoforms 1, Variants 8, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.activation of mitophagy in response to mitochondrial depolarization
.ncRNA metabolic process
.gene expression
  + 5 more...
.poly(A) RNA binding
.RNA binding
.catalytic step 2 spliceosome
.SMN-Sm protein complex
.pICln-Sm protein complex
  + 8 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 8 0
2014-09-19protein level
1 6 0
2014-05-27protein level
1 6 0
2014-02-25protein level
1 6 0
2013-12-09protein level
1 6 0
2013-11-01protein level
1 6 0
2013-09-12protein level
1 6 0
2013-08-17protein level
1 6 0
2013-07-15protein level
1 2 0
2013-06-11protein level
1 2 0
2013-02-12protein level
1 0 0
2012-12-20protein level
1 0 0
2012-10-30protein level
1 1 0
2012-10-07protein level
1 1 0
2012-08-24protein level
1 1 0
2012-07-28protein level
1 0 0
2012-06-08protein level
1 0 0
2012-05-07protein level
1 0 0
2012-04-10protein level
1 0 0
2012-01-13protein level
1 0 0
2011-12-20protein level
1 0 0
2011-11-11protein level
1 0 0
2011-08-23protein level
1 0 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_P62314-1
4 0 0 13273.323
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-372177,EBI-724693 CLNS1A  
  .ncRNA metabolic process
.gene expression
.cell volume homeostasis
  + 2 more...
.protein heterodimerization activity
.poly(A) RNA binding
.pICln-Sm protein complex
.methylosome
.plasma membrane
  + 5 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland30
ascites25
bladder100
blood49
bone13
bone marrow102
brain20
cervix41
connective tissue13
embryonic tissue112
esophagus49
eye28
intestine25
kidney23
liver43
lung20
lymph45
lymph node33
mammary gland46
mouth30
muscle9
ovary9
pancreas14
pharynx122
pituitary gland60
placenta7
prostate26
skin14
spleen37
stomach31
testis41
tonsil58
umbilical cord72
uterus25
vascular19
Health State
TissuesTPM*
normal33
adrenal tumor79
bladder carcinoma227
breast (mammary gland) tumor53
cervical tumor57
chondrosarcoma24
colorectal tumor44
esophageal tumor57
gastrointestinal tumor16
germ cell tumor34
glioma18
head and neck tumor14
leukemia74
liver tumor20
lung tumor19
lymphoma27
non-neoplasia10
ovarian tumor13
pancreatic tumor9
primitive neuroectodermal tumor of the CNS47
prostate cancer48
retinoblastoma129
skin tumor23
soft tissue/muscle tissue tumor7
uterine tumor33
Developmental Stage
TissuesTPM*
adult23
embryoid body71
blastocyst48
neonate32
fetus23
infant127
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue12.8
adrenal gland14
appendix19.9
bone marrow21.6
cerebral cortex13.3
colon23.1
duodenum16
esophagus11.4
gallbladder8
heart muscle6.7
kidney12
liver10
lung8.8
lymph node24.5
ovary10.6
pancreas3.6
placenta12.9
prostate14.4
salivary gland6.3
skin7.1
small intestine19.7
spleen13.1
stomach18.8
testis13.1
thyroid gland7.8
urinary bladder9.8
Tissues
TissuesExpression level
adrenal glandMedium
appendixMedium
bone marrowLow
breastMedium
bronchusMedium
cerebellumLow
cerebral cortexMedium
cervix, uterineMedium
colonMedium
duodenumMedium
endometrium 1Low
endometrium 2Low
epididymisMedium
esophagusMedium
fallopian tubeMedium
gallbladderMedium
heart muscleLow
hippocampusMedium
kidneyHigh
lateral ventricleHigh
liverMedium
lungMedium
lymph nodeMedium
oral mucosaHigh
pancreasHigh
parathyroid glandLow
placentaMedium
prostateMedium
rectumHigh
salivary glandLow
seminal vesicleMedium
skeletal muscleMedium
skin 1Medium
skin 2Medium
small intestineMedium
smooth muscleLow
soft tissue 1Medium
soft tissue 2Medium
spleenLow
stomach 1Medium
stomach 2High
testisHigh
thyroid glandMedium
tonsilMedium
urinary bladderMedium
vaginaMedium
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*601063, gene) Small nuclear ribonucleoprotein polypeptide d1; SNRPD1OMIM


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