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> Protein (NX_P82979)
Protein (NX_P82979)
Protein
Gene SymbolSARNP to neXtProt (NX_P82979)
DescriptionSAP domain-containing ribonucleoprotein
Chromosome12
Location12q13.2 (56146247 ~ 56211540) to Ensembl
Sequene Features : Isoforms 1, Variants 29, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.regulation of translation
.mRNA export from nucleus
.regulation of transcription, DNA-templated
.transcription, DNA-templated
.poly(A) RNA binding
.DNA binding
.intracellular membrane-bounded organelle
.nuclear speck
.nucleoplasm
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 29 7
2014-09-19protein level
1 26 7
2014-05-27protein level
1 26 7
2014-02-25protein level
1 26 7
2013-12-09protein level
1 18 7
2013-11-01protein level
1 17 3
2013-09-12protein level
1 17 4
2013-08-17protein level
1 17 4
2013-07-15protein level
1 9 4
2013-06-11protein level
1 9 4
2013-02-12protein level
1 3 4
2012-12-20protein level
1 3 4
2012-10-30protein level
1 4 4
2012-10-07protein level
1 4 4
2012-08-24protein level
1 2 4
2012-07-28protein level
1 2 4
2012-06-08protein level
1 5 4
2012-05-07protein level
1 5 4
2012-04-10protein level
1 5 4
2012-01-13protein level
1 4 4
2011-12-20protein level
1 4 4
2011-11-11protein level
1 4 3
2011-08-23protein level
1 4 3
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_P82979-1
9 0 0 23656.36
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-347495,EBI-348253 DDX39A  
  .RNA secondary structure unwinding
.regulation of gene expression
.cellular response to DNA damage stimulus
  + 2 more...
.poly(A) RNA binding
.ATP binding
.ATP-dependent RNA helicase activity
.membrane
.cytoplasm
.nucleolus
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland60
ascites326
bladder100
blood139
bone223
bone marrow41
brain27
cervix20
connective tissue187
embryonic tissue56
eye105
heart55
intestine25
kidney52
larynx170
liver68
lung152
lymph node22
mammary gland112
mouth30
muscle18
nerve64
ovary88
pancreas60
pharynx171
placenta74
prostate63
salivary gland49
skin104
stomach62
testis82
thymus62
thyroid21
tonsil293
uterus155
vascular38
Health State
TissuesTPM*
normal60
adrenal tumor79
breast (mammary gland) tumor118
cervical tumor28
chondrosarcoma325
colorectal tumor26
gastrointestinal tumor143
germ cell tumor106
glioma65
head and neck tumor59
kidney tumor72
leukemia63
liver tumor72
lung tumor87
lymphoma27
non-neoplasia20
ovarian tumor26
pancreatic tumor85
primitive neuroectodermal tumor of the CNS55
prostate cancer48
retinoblastoma172
skin tumor119
soft tissue/muscle tissue tumor303
uterine tumor110
Developmental Stage
TissuesTPM*
adult86
embryoid body71
blastocyst48
fetus61
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue27.9
adrenal gland44
appendix36.6
bone marrow39.3
cerebral cortex29.4
colon35.2
duodenum22.8
esophagus32.3
gallbladder27.9
heart muscle44.4
kidney34.3
liver21.4
lung31.3
lymph node47.5
ovary36.5
pancreas12.2
placenta39.1
prostate38.3
salivary gland18.6
skin22.8
small intestine24.3
spleen27
stomach26.5
testis39.2
thyroid gland29.1
urinary bladder42.1
Tissues
TissuesExpression level
adrenal glandHigh
appendixMedium
bone marrowHigh
breastMedium
bronchusHigh
cerebellumMedium
cerebral cortexMedium
cervix, uterineHigh
colonHigh
duodenumHigh
endometrium 1Low
endometrium 2High
epididymisHigh
esophagusHigh
fallopian tubeHigh
gallbladderHigh
heart muscleLow
hippocampusLow
kidneyHigh
lateral ventricleMedium
liverLow
lungHigh
lymph nodeLow
nasopharynxHigh
oral mucosaHigh
ovaryMedium
pancreasMedium
parathyroid glandLow
placentaHigh
prostateHigh
rectumHigh
salivary glandMedium
seminal vesicleHigh
skeletal muscleHigh
skin 1High
skin 2High
small intestineMedium
smooth muscleMedium
soft tissue 1Medium
soft tissue 2Medium
spleenLow
stomach 1High
stomach 2Medium
testisHigh
thyroid glandMedium
tonsilHigh
urinary bladderHigh
vaginaHigh
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*610049, gene) Sap domain-containing ribonucleoprotein; SARNPOMIM


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