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> Protein (NX_Q15415)
Protein (NX_Q15415)
Protein
Gene SymbolRBMY1F to neXtProt (NX_Q15415)
DescriptionRNA-binding motif protein, Y chromosome, family 1 member F/J
ChromosomeY
LocationYq11.223 (24314689 ~ 24329129) to Ensembl
Sequene Features : Isoforms 2, Variants 0, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.RNA splicing
.spermatogenesis
.mRNA processing
.RNA binding
.nucleotide binding
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01transcript level
2 0 0
2014-09-19transcript level
2 0 0
2014-05-27transcript level
2 0 0
2014-02-25transcript level
2 0 0
2013-12-09transcript level
2 0 0
2013-11-01transcript level
2 0 0
2013-09-12transcript level
2 0 0
2013-08-17transcript level
2 0 0
2013-07-15transcript level
2 0 0
2013-06-11transcript level
2 0 0
2013-02-12transcript level
2 0 0
2012-12-20transcript level
2 0 0
2012-10-30transcript level
2 1 0
2012-10-07transcript level
2 1 0
2012-08-24transcript level
2 1 0
2012-07-28transcript level
2 1 0
2012-06-08transcript level
2 1 0
2012-05-07transcript level
2 1 0
2012-04-10transcript level
2 1 0
2012-01-13transcript level
2 1 0
2011-12-20transcript level
2 1 0
2011-11-11transcript level
2 1 0
2011-08-23transcript level
2 1 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q15415-1
0 1 17 55694.3694
NX_Q15415-2
2 1 13 47424.8018
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-8642021,EBI-743526 RBMX  
  .cellular response to interleukin-1
.protein homooligomerization
.positive regulation of mRNA splicing, via spliceosome
  + 10 more...
.poly(A) RNA binding
.mRNA binding
.single-stranded RNA binding
  + 4 more...
.catalytic step 2 spliceosome
.extracellular exosome
.supraspliceosomal complex
  + 6 more...
2 EBI-8642021,EBI-745579 CLK3  
  .protein autophosphorylation
.regulation of RNA splicing
.protein phosphorylation
.poly(A) RNA binding
.ATP binding
.protein tyrosine kinase activity
  + 2 more...
.intermediate filament cytoskeleton
.nuclear speck
.membrane
  + 3 more...
3 EBI-8642021,EBI-2803328 PRR3  
  .N/A .metal ion binding
.poly(A) RNA binding
.N/A
4 EBI-8642021,EBI-2949699 RBM3  
  .positive regulation of translation
.production of miRNAs involved in gene silencing by miRNA
.response to cold
  + 3 more...
.poly(A) RNA binding
.ribosomal large subunit binding
.RNA binding
.nucleotide binding
.dendrite
.cytoplasm
.nucleus
5 EBI-8642021,EBI-538850 CIRBP  
  .mRNA stabilization
.positive regulation of translation
.stress granule assembly
  + 3 more...
.small ribosomal subunit rRNA binding
.poly(A) RNA binding
.translation repressor activity
  + 2 more...
.cytoplasmic stress granule
.cytoplasm
.nucleoplasm
.nucleus
6 EBI-8642021,EBI-745934 CBX2  
  .development of primary sexual characteristics
.cellular protein metabolic process
.post-translational protein modification
  + 5 more...
.chromatin binding
.DNA binding
.PRC1 complex
.PcG protein complex
.nucleoplasm
  + 3 more...
7 EBI-8642021,EBI-10219231 ZNF385C  
  .N/A .zinc ion binding
.nucleic acid binding
.nucleus
8 EBI-8642021,EBI-8637627 AEN  
  .nucleic acid phosphodiester bond hydrolysis
.intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
.response to ionizing radiation
.exonuclease activity
.nucleic acid binding
.nuclear membrane
.nucleolus
.nucleoplasm
.nucleus
9 EBI-8642021,EBI-2849854 YTHDC1  
  .mRNA splice site selection .N6-methyladenosine-containing RNA binding
.poly(A) RNA binding
.RNA binding
.nuclear body
.nucleus
10 EBI-8642021,EBI-744023 FAM103A1  
  .recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex
.methylation
.7-methylguanosine mRNA capping
.poly(A) RNA binding
.RNA binding
.mRNA cap binding complex
.nucleus
11 EBI-8642021,EBI-1044593 APOBEC3C  
  .DNA demethylation
.defense response to virus
.innate immune response
  + 4 more...
.poly(A) RNA binding
.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
.zinc ion binding
.cytoplasm
.nucleus
12 EBI-8642021,EBI-740818 RASD1  
  .negative regulation of transcription, DNA-templated
.metabolic process
.small GTPase mediated signal transduction
  + 3 more...
.GTP binding
.GTPase activity
.perinuclear region of cytoplasm
.plasma membrane
.nucleus
13 EBI-8642021,EBI-10329013 PCDHB14  
  .calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
.synapse assembly
.synaptic transmission
.homophilic cell adhesion via plasma membrane adhesion molecules
.calcium ion binding .integral component of membrane
.plasma membrane
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
testis4
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
testis3.2
Tissues
TissuesExpression level
testisMedium
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*400006, gene) Rna-binding motif protein, y chromosome, family 1, member a1; RBMY1A1OMIM


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