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> Protein (NX_Q15532)
Protein (NX_Q15532)
Protein
Gene SymbolSS18 to neXtProt (NX_Q15532)
DescriptionProtein SSXT
Chromosome18
Location18q11.2 (23596578 ~ 23671181) to Ensembl
Sequene Features : Isoforms 2, Variants 48, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.neuronal stem cell maintenance
.ephrin receptor signaling pathway
.positive regulation of transcription from RNA polymerase II promoter
  + 5 more...
.ligand-dependent nuclear receptor transcription coactivator activity .npBAF complex
.cytoplasmic microtubule
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 48 1
2014-09-19protein level
2 32 1
2014-05-27protein level
2 32 1
2014-02-25protein level
2 32 1
2013-12-09protein level
2 24 1
2013-11-01protein level
2 23 1
2013-09-12protein level
2 23 0
2013-08-17protein level
2 23 0
2013-07-15protein level
2 20 0
2013-06-11protein level
2 20 0
2013-02-12protein level
2 7 0
2012-12-20protein level
2 7 0
2012-10-30protein level
2 11 0
2012-10-07protein level
2 11 0
2012-08-24protein level
2 10 0
2012-07-28protein level
2 10 0
2012-06-08protein level
2 10 0
2012-05-07protein level
2 10 0
2012-04-10protein level
2 10 0
2012-01-13protein level
2 4 0
2011-12-20protein level
2 4 0
2011-11-11protein level
2 4 0
2011-08-23protein level
2 4 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q15532-1
1 5 0 45899.0874
NX_Q15532-2
1 5 0 42188.6084
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-2560599,EBI-1170906 ATF2  
  .positive regulation of mitochondrial membrane permeability involved in apoptotic process
.adipose tissue development
.stress-activated MAPK cascade
  + 27 more...
.metal ion binding
.cAMP response element binding
.protein kinase binding
  + 13 more...
.site of double-strand break
.mitochondrial outer membrane
.cytoplasm
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland60
ascites50
bladder33
blood73
bone13
bone marrow61
brain80
cervix103
connective tissue60
ear186
embryonic tissue183
esophagus49
eye33
heart33
intestine77
kidney47
liver34
lung44
lymph112
lymph node77
mammary gland72
mouth347
muscle65
nerve64
ovary98
pancreas32
pituitary gland60
placenta98
prostate121
salivary gland98
skin61
spleen74
stomach104
testis89
thymus213
thyroid64
trachea405
umbilical cord72
uterus64
vascular96
Health State
TissuesTPM*
normal75
adrenal tumor79
breast (mammary gland) tumor85
cervical tumor86
chondrosarcoma24
colorectal tumor115
esophageal tumor57
gastrointestinal tumor84
germ cell tumor75
glioma46
head and neck tumor194
kidney tumor58
leukemia63
liver tumor41
lung tumor38
lymphoma96
non-neoplasia72
ovarian tumor105
pancreatic tumor9
primitive neuroectodermal tumor of the CNS47
prostate cancer77
retinoblastoma64
skin tumor47
soft tissue/muscle tissue tumor7
uterine tumor77
Developmental Stage
TissuesTPM*
adult75
embryoid body271
blastocyst162
neonate32
fetus62
infant127
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue31.6
adrenal gland57.1
appendix40.9
bone marrow20.1
cerebral cortex21.5
colon29
duodenum24.8
esophagus42.3
gallbladder46.4
heart muscle25.8
kidney37.2
liver26.4
lung34.2
lymph node49.8
ovary59.8
pancreas12.3
placenta46.6
prostate40.7
salivary gland23.4
skin51.6
small intestine26.4
spleen34.2
stomach33.6
testis41.8
thyroid gland64.7
urinary bladder46
Tissues
TissuesExpression level
adrenal glandMedium
appendixMedium
bone marrowLow
breastMedium
bronchusMedium
cerebellumMedium
cerebral cortexMedium
cervix, uterineMedium
colonHigh
duodenumMedium
endometrium 1Medium
endometrium 2Low
epididymisMedium
esophagusMedium
fallopian tubeMedium
gallbladderHigh
heart muscleLow
hippocampusLow
kidneyMedium
lateral ventricleLow
liverLow
lungMedium
lymph nodeLow
nasopharynxMedium
oral mucosaMedium
ovaryLow
pancreasLow
parathyroid glandLow
placentaMedium
prostateMedium
rectumHigh
salivary glandMedium
seminal vesicleMedium
skeletal muscleLow
skin 1Medium
skin 2Medium
small intestineMedium
smooth muscleLow
soft tissue 1Low
soft tissue 2Low
spleenLow
stomach 1Medium
stomach 2Low
testisMedium
thyroid glandMedium
tonsilLow
urinary bladderMedium
vaginaMedium
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*600192, gene) Synovial sarcoma translocation, chromosome 18; SS18OMIM
2synovial sarcomaCGP


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