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> Protein (NX_Q17RW2)
Protein (NX_Q17RW2)
Protein
Gene SymbolCOL24A1 to neXtProt (NX_Q17RW2)
DescriptionCollagen alpha-1(XXIV) chain
Chromosome1
Location1p22.3 (86194916 ~ 86622626) to Ensembl
Sequene Features : Isoforms 2, Variants 280, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.extracellular matrix organization
.hematopoietic progenitor cell differentiation
.extracellular matrix structural constituent .endoplasmic reticulum lumen
.collagen trimer
.proteinaceous extracellular matrix
.extracellular region
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 280 3
2014-09-19protein level
2 206 3
2014-05-27protein level
2 206 3
2014-02-25protein level
2 202 3
2013-12-09protein level
2 158 3
2013-11-01protein level
2 156 3
2013-09-12protein level
2 156 3
2013-08-17protein level
2 156 3
2013-07-15protein level
2 115 3
2013-06-11protein level
2 115 3
2013-02-12protein level
2 49 6
2012-12-20protein level
2 43 6
2012-10-30protein level
2 69 6
2012-10-07protein level
2 69 3
2012-08-24transcript level
2 54 3
2012-07-28transcript level
2 53 3
2012-06-08transcript level
2 54 3
2012-05-07transcript level
2 55 3
2012-04-10transcript level
2 55 3
2012-01-13transcript level
2 27 3
2011-12-20transcript level
2 27 3
2011-11-11transcript level
2 27 3
2011-08-23transcript level
2 27 3
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q17RW2-1
2 82 0 175387.5609
NX_Q17RW2-2
0 82 0 173475.585
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-2529266,EBI-743771 APPBP2  
  .intracellular transport
.metabolic process
.intracellular protein transport
.microtubule motor activity .cytoplasmic vesicle membrane
.microtubule associated complex
.microtubule
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bone marrow41
brain6
ear62
embryonic tissue4
eye4
intestine4
kidney4
stomach10
testis4
Health State
TissuesTPM*
normal3
gastrointestinal tumor8
germ cell tumor7
kidney tumor14
non-neoplasia31
Developmental Stage
TissuesTPM*
adult4
fetus7
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
appendix1.2
cerebral cortex1.2
duodenum1.4
esophagus1
gallbladder1.9
heart muscle1.3
ovary2.5
small intestine1.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*610025, gene) Collagen, type xxiv, alpha-1; COL24A1OMIM


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