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> Protein (NX_Q2TBC4)
Protein (NX_Q2TBC4)
Protein
Gene SymbolPRICKLE4 to neXtProt (NX_Q2TBC4)
DescriptionPrickle-like protein 4
Chromosome6
Location6p21.1 (41748087 ~ 41757879) to Ensembl
Sequene Features : Isoforms 3, Variants 57, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.N/A .zinc ion binding .nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01transcript level
3 57 0
2014-09-19transcript level
3 46 0
2014-05-27transcript level
3 46 0
2014-02-25transcript level
3 46 0
2013-12-09transcript level
3 32 0
2013-11-01transcript level
3 32 0
2013-09-12transcript level
3 32 0
2013-08-17transcript level
3 32 0
2013-07-15transcript level
3 28 0
2013-06-11transcript level
3 28 0
2013-02-12transcript level
3 19 0
2012-12-20transcript level
3 18 0
2012-10-30transcript level
3 24 0
2012-10-07transcript level
3 24 0
2012-08-24transcript level
3 24 0
2012-07-28transcript level
3 21 0
2012-06-08transcript level
3 22 0
2012-05-07transcript level
3 22 0
2012-04-10transcript level
3 22 0
2012-01-13transcript level
3 8 0
2011-12-20transcript level
3 8 0
2011-11-11transcript level
3 8 0
2011-08-23transcript level
3 8 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q2TBC4-1
0 18 0 37526.6517
NX_Q2TBC4-2
5 12 0 33311.0878
NX_Q2TBC4-3
1 17 0 41739.4322
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
blood16
brain8
embryonic tissue18
eye4
heart33
intestine17
lymph node11
mammary gland6
muscle28
pancreas4
placenta3
prostate15
spleen149
stomach10
testis9
trachea38
uterus12
Health State
TissuesTPM*
normal11
breast (mammary gland) tumor10
colorectal tumor8
gastrointestinal tumor8
germ cell tumor3
leukemia21
non-neoplasia10
pancreatic tumor9
soft tissue/muscle tissue tumor23
Developmental Stage
TissuesTPM*
adult6
embryoid body14
blastocyst32
fetus1
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue8.8
adrenal gland8.7
appendix4
bone marrow1.5
cerebral cortex4.5
colon4.7
duodenum7.6
esophagus12.2
gallbladder21.9
heart muscle8
kidney6.7
liver3.5
lung16.9
lymph node5.2
ovary4.6
pancreas2.9
placenta7.1
prostate10.8
salivary gland8
skin6.3
small intestine4.2
spleen25.9
stomach13.6
testis6.7
thyroid gland10.8
urinary bladder12.8
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*611389, gene) Chromosome 6, open reading frame 49; C6ORF49OMIM


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