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> Protein (NX_Q5TAT6)
Protein (NX_Q5TAT6)
Protein
Gene SymbolCOL13A1 to neXtProt (NX_Q5TAT6)
DescriptionCollagen alpha-1(XIII) chain
Chromosome10
Location10q22.1 (71561644 ~ 71724031) to Ensembl
Sequene Features : Isoforms 11, Variants 93, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.collagen catabolic process
.extracellular matrix organization
.cell differentiation
  + 5 more...
.heparin binding .cell-cell junction
.plasma membrane
.endoplasmic reticulum lumen
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
11 93 0
2014-09-19protein level
11 66 0
2014-05-27protein level
11 66 0
2014-02-25protein level
11 64 0
2013-12-09protein level
11 47 0
2013-11-01protein level
11 47 0
2013-09-12protein level
11 47 0
2013-08-17protein level
11 47 0
2013-07-15protein level
10 31 0
2013-06-11protein level
10 31 0
2013-02-12protein level
10 12 0
2012-12-20protein level
10 8 0
2012-10-30protein level
10 15 0
2012-10-07protein level
10 15 0
2012-08-24protein level
10 13 0
2012-07-28protein level
10 13 0
2012-06-08protein level
10 17 0
2012-05-07protein level
10 17 0
2012-04-10protein level
9 17 0
2012-01-13protein level
9 17 0
2011-12-20protein level
9 18 0
2011-11-11protein level
9 18 0
2011-08-23protein level
9 18 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q5TAT6-1
0 36 0 69906.4168
NX_Q5TAT6-10
1 29 0 62996.893
NX_Q5TAT6-11
2 28 0 59427.9259
NX_Q5TAT6-2
0 34 0 67396.8874
NX_Q5TAT6-3
0 34 0 66335.3651
NX_Q5TAT6-4
0 33 0 64924.7315
NX_Q5TAT6-5
0 35 0 68495.7832
NX_Q5TAT6-6
0 36 0 68657.77
NX_Q5TAT6-7
0 36 0 67596.2477
NX_Q5TAT6-8
0 34 0 66845.8409
NX_Q5TAT6-9
1 32 0 62038.2882
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bone41
brain6
connective tissue20
embryonic tissue37
eye4
intestine4
kidney18
lung5
mammary gland6
muscle9
ovary68
prostate5
skin9
uterus4
Health State
TissuesTPM*
normal10
chondrosarcoma24
kidney tumor29
ovarian tumor65
prostate cancer19
soft tissue/muscle tissue tumor7
uterine tumor11
Developmental Stage
TissuesTPM*
adult7
embryoid body57
blastocyst32
fetus16
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adrenal gland1.2
appendix1.9
colon3.2
duodenum2.3
esophagus1.3
gallbladder4.3
heart muscle2.8
lung13.3
lymph node1.1
placenta1.8
prostate13.1
skin4.4
small intestine2.9
spleen5
stomach3.4
urinary bladder2.8
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*120350, gene) Collagen, type xiii, alpha-1; COL13A1OMIM


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