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> Protein (NX_Q6P087)
Protein (NX_Q6P087)
Protein
Gene SymbolRPUSD3 to neXtProt (NX_Q6P087)
DescriptionRNA pseudouridylate synthase domain-containing protein 3
Chromosome3
Location3p25.3 (9879533 ~ 9886286) to Ensembl
Sequene Features : Isoforms 3, Variants 37, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.pseudouridine synthesis .poly(A) RNA binding
.pseudouridine synthase activity
.N/A
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 37 1
2014-09-19protein level
3 29 1
2014-05-27protein level
3 29 1
2014-02-25protein level
3 29 1
2013-12-09protein level
3 22 1
2013-11-01protein level
3 20 0
2013-09-12protein level
3 20 0
2013-08-17protein level
3 20 0
2013-07-15protein level
3 17 0
2013-06-11protein level
3 17 0
2013-02-12protein level
3 11 0
2012-12-20protein level
3 10 0
2012-10-30protein level
3 14 0
2012-10-07protein level
3 14 0
2012-08-24transcript level
3 14 0
2012-07-28transcript level
3 13 0
2012-06-08transcript level
3 13 0
2012-05-07transcript level
3 14 0
2012-04-10transcript level
3 14 0
2012-01-13transcript level
3 9 0
2011-12-20transcript level
3 9 0
2011-11-11transcript level
3 9 0
2011-08-23transcript level
3 9 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q6P087-1
0 15 0 38436.6601
NX_Q6P087-2
1 14 0 36921.7826
NX_Q6P087-3
0 5 0 14877.9578
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-5458784,EBI-10172290 KRTAP10-7  
  .N/A .identical protein binding .keratin filament
2 EBI-5458784,EBI-948001 KRT31  
  .epidermis development .structural constituent of cytoskeleton .extracellular exosome
.intermediate filament
.extracellular space
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland60
ascites50
bladder100
blood89
bone41
bone marrow41
brain38
cervix61
connective tissue13
embryonic tissue42
eye71
intestine17
kidney33
larynx42
liver24
lung26
lymph67
lymph node44
mammary gland19
muscle37
nerve64
ovary39
pancreas37
placenta52
prostate36
salivary gland197
skin47
spleen18
stomach52
testis112
thymus62
thyroid85
tonsil58
uterus43
Health State
TissuesTPM*
normal29
bladder carcinoma56
breast (mammary gland) tumor10
cervical tumor86
chondrosarcoma36
colorectal tumor26
gastrointestinal tumor84
germ cell tumor49
glioma83
head and neck tumor37
kidney tumor58
leukemia63
liver tumor41
lung tumor58
lymphoma83
non-neoplasia10
ovarian tumor26
pancreatic tumor28
primitive neuroectodermal tumor of the CNS39
prostate cancer38
retinoblastoma215
skin tumor71
soft tissue/muscle tissue tumor15
uterine tumor66
Developmental Stage
TissuesTPM*
adult33
blastocyst16
fetus10
juvenile17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue11.5
adrenal gland18.4
appendix15.6
bone marrow13.1
cerebral cortex18.4
colon16.8
duodenum18.2
esophagus20.1
gallbladder11.2
heart muscle19.1
kidney17.6
liver11.1
lung15.5
lymph node20.6
ovary17.5
pancreas10.1
placenta16.5
prostate16.7
salivary gland11.5
skin22.7
small intestine13.5
spleen17.2
stomach15.9
testis34.2
thyroid gland13.3
urinary bladder15.3
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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