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> Protein (NX_Q8TCA0)
Protein (NX_Q8TCA0)
Protein
Gene SymbolLRRC20 to neXtProt (NX_Q8TCA0)
DescriptionLeucine-rich repeat-containing protein 20
Chromosome10
Location10q22.1 (72058729 ~ 72142382) to Ensembl
Sequene Features : Isoforms 3, Variants 28, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.N/A .N/A .N/A
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 28 2
2014-09-19protein level
3 24 2
2014-05-27protein level
3 24 2
2014-02-25protein level
3 23 2
2013-12-09protein level
3 15 2
2013-11-01protein level
3 15 2
2013-09-12protein level
3 15 2
2013-08-17protein level
3 15 2
2013-07-15protein level
3 11 2
2013-06-11protein level
3 11 2
2013-02-12protein level
3 6 2
2012-12-20protein level
3 7 2
2012-10-30protein level
3 10 2
2012-10-07protein level
3 10 1
2012-08-24protein level
3 9 1
2012-07-28protein level
3 9 1
2012-06-08protein level
3 9 1
2012-05-07protein level
3 9 1
2012-04-10protein level
3 9 1
2012-01-13protein level
3 6 1
2011-12-20protein level
3 6 1
2011-11-11protein level
3 6 1
2011-08-23transcript level
3 6 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q8TCA0-1
1 10 0 20495.8822
NX_Q8TCA0-2
1 6 0 14877.8465
NX_Q8TCA0-3
0 8 0 14095.5873
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-10274039,EBI-740037 ZBED1  
  .metabolic process .metal ion binding
.transposase activity
.DNA binding
.nuclear chromosome
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland30
ascites25
blood16
bone13
bone marrow20
brain45
cervix20
embryonic tissue18
eye43
heart89
intestine47
kidney18
liver58
lung29
mammary gland13
mouth30
muscle103
nerve64
ovary78
pancreas28
prostate36
skin23
spleen37
stomach20
testis147
thymus62
uterus34
vascular19
Health State
TissuesTPM*
normal35
breast (mammary gland) tumor21
chondrosarcoma12
colorectal tumor26
gastrointestinal tumor16
germ cell tumor53
glioma55
head and neck tumor14
kidney tumor14
leukemia42
liver tumor114
lung tumor38
ovarian tumor78
pancreatic tumor57
primitive neuroectodermal tumor of the CNS55
prostate cancer19
retinoblastoma21
skin tumor15
uterine tumor77
Developmental Stage
TissuesTPM*
adult33
embryoid body28
blastocyst16
fetus48
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue2
adrenal gland5
appendix2.6
bone marrow2.6
cerebral cortex11.8
colon4.2
duodenum2.4
esophagus17.6
gallbladder4.9
heart muscle30.6
kidney2.8
liver6.8
lung4.9
lymph node3.7
ovary4.7
pancreas1.2
placenta1.5
prostate7.5
salivary gland2.7
skin2.2
small intestine2.2
spleen3.1
stomach2.8
testis9.9
thyroid gland6.7
urinary bladder5.3
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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