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> Protein (NX_Q96DI7)
Protein (NX_Q96DI7)
Protein
Gene SymbolSNRNP40 to neXtProt (NX_Q96DI7)
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein
Chromosome1
Location1p35.2 (31732417 ~ 31769662) to Ensembl
Sequene Features : Isoforms 2, Variants 34, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.gene expression
.RNA splicing
.RNA processing
  + 2 more...
.poly(A) RNA binding .catalytic step 2 spliceosome
.cytoplasm
.small nucleolar ribonucleoprotein complex
  + 2 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 34 2
2014-09-19protein level
1 26 2
2014-05-27protein level
1 26 2
2014-02-25protein level
1 26 2
2013-12-09protein level
1 16 2
2013-11-01protein level
1 16 1
2013-09-12protein level
1 16 1
2013-08-17protein level
1 16 1
2013-07-15protein level
1 11 0
2013-06-11protein level
1 11 0
2013-02-12protein level
1 3 0
2012-12-20protein level
1 3 0
2012-10-30protein level
1 7 0
2012-10-07protein level
1 7 0
2012-08-24protein level
1 6 0
2012-07-28protein level
1 6 0
2012-06-08protein level
1 10 0
2012-05-07protein level
1 10 0
2012-04-10protein level
1 10 0
2012-01-13protein level
1 10 0
2011-12-20protein level
1 10 0
2011-11-11protein level
1 10 0
2011-08-23protein level
1 10 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q96DI7-1
1 16 0 39285.5966
NX_Q96DI7-2
2 16 0 44488.0749
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-538492,EBI-538479 PRPF8  
  .gene expression
.RNA splicing
.mRNA processing
  + 3 more...
.pre-mRNA intronic binding
.K63-linked polyubiquitin binding
.poly(A) RNA binding
  + 5 more...
.catalytic step 2 spliceosome
.nuclear speck
.membrane
  + 3 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
ascites50
bladder33
blood57
bone55
brain13
cervix41
connective tissue20
embryonic tissue112
eye47
heart11
intestine43
kidney18
larynx85
liver43
lung14
lymph406
lymph node55
mammary gland6
mouth15
muscle56
ovary39
pancreas18
pharynx49
pituitary gland121
placenta38
prostate36
salivary gland49
skin47
spleen18
stomach83
testis41
thymus12
uterus51
vascular19
Health State
TissuesTPM*
normal32
cervical tumor57
chondrosarcoma48
colorectal tumor35
gastrointestinal tumor92
germ cell tumor34
glioma37
head and neck tumor29
kidney tumor14
leukemia42
liver tumor31
lung tumor9
lymphoma373
non-neoplasia20
ovarian tumor26
pancreatic tumor28
primitive neuroectodermal tumor of the CNS86
prostate cancer38
retinoblastoma107
skin tumor47
soft tissue/muscle tissue tumor63
uterine tumor11
Developmental Stage
TissuesTPM*
adult35
embryoid body100
blastocyst146
fetus28
juvenile107
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue16.3
adrenal gland20.1
appendix22
bone marrow25.6
cerebral cortex10.6
colon22.1
duodenum15.3
esophagus16.3
gallbladder15.1
heart muscle11.5
kidney16
liver11.9
lung17.3
lymph node34.5
ovary20
pancreas6.5
placenta20.2
prostate19.7
salivary gland10.4
skin18
small intestine14.8
spleen22.1
stomach16.5
testis22.3
thyroid gland19.8
urinary bladder22.3
Tissues
TissuesExpression level
adrenal glandHigh
appendixMedium
bone marrowHigh
breastHigh
bronchusHigh
cerebellumHigh
cerebral cortexMedium
cervix, uterineHigh
colonHigh
duodenumHigh
endometrium 1High
endometrium 2High
epididymisHigh
esophagusHigh
fallopian tubeHigh
gallbladderHigh
heart muscleMedium
hippocampusMedium
kidneyHigh
lateral ventricleMedium
liverMedium
lungMedium
lymph nodeHigh
nasopharynxHigh
oral mucosaHigh
ovaryHigh
pancreasHigh
parathyroid glandMedium
placentaHigh
prostateMedium
rectumHigh
salivary glandHigh
seminal vesicleHigh
skeletal muscleMedium
skin 1Medium
skin 2High
small intestineHigh
smooth muscleMedium
soft tissue 1Medium
soft tissue 2Medium
spleenMedium
stomach 1Medium
stomach 2Medium
testisHigh
thyroid glandMedium
tonsilHigh
urinary bladderHigh
vaginaHigh
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*607797, gene) Small nuclear ribonucleoprotein, 40-kd; SNRNP40OMIM


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