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> Protein (NX_Q96JP9)
Protein (NX_Q96JP9)
Protein
Gene SymbolCDHR1 to neXtProt (NX_Q96JP9)
DescriptionCadherin-related family member 1
Chromosome10
Location10q23.1 (85954410 ~ 85979377) to Ensembl
Sequene Features : Isoforms 2, Variants 166, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.photoreceptor cell maintenance
.cellular process
.homophilic cell adhesion via plasma membrane adhesion molecules
.calcium ion binding .photoreceptor outer segment membrane
.integral component of plasma membrane
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 166 4
2014-09-19protein level
2 122 4
2014-05-27protein level
2 122 4
2014-02-25protein level
2 121 4
2013-12-09protein level
2 85 4
2013-11-01protein level
2 79 4
2013-09-12protein level
2 79 4
2013-08-17protein level
2 79 4
2013-07-15protein level
2 57 4
2013-06-11protein level
2 57 4
2013-02-12protein level
2 30 6
2012-12-20protein level
2 31 6
2012-10-30protein level
2 39 6
2012-10-07protein level
2 39 3
2012-08-24protein level
2 38 3
2012-07-28protein level
2 37 3
2012-06-08protein level
2 37 3
2012-05-07protein level
2 34 3
2012-04-10protein level
2 34 3
2012-01-13protein level
2 13 3
2011-12-20protein level
2 13 3
2011-11-11protein level
2 13 3
2011-08-23protein level
2 13 3
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q96JP9-1
6 29 0 93536.5764
NX_Q96JP9-2
4 29 0 81452.0229
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland30
bladder33
brain22
connective tissue6
embryonic tissue4
eye62
intestine4
kidney18
lung8
mammary gland13
mouth45
ovary9
pharynx24
skin104
spleen18
thymus12
thyroid21
uterus8
Health State
TissuesTPM*
normal3
adrenal tumor79
bladder carcinoma56
breast (mammary gland) tumor21
colorectal tumor106
gastrointestinal tumor8
glioma27
head and neck tumor29
retinoblastoma150
uterine tumor22
Developmental Stage
TissuesTPM*
adult1
blastocyst16
fetus19
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adrenal gland2.4
appendix1.5
cerebral cortex13.9
colon26.5
esophagus6
lymph node1
ovary1.3
skin238.7
small intestine10.7
spleen7.6
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*609502, gene) Cadherin-related family, member 1; CDHR1OMIM
2(#613660, phenotype) Cone-rod dystrophy 15; CORD15OMIM


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