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> Protein (NX_Q96JS3)
Protein (NX_Q96JS3)
Protein
Gene SymbolPGBD1 to neXtProt (NX_Q96JS3)
DescriptionPiggyBac transposable element-derived protein 1
Chromosome6
Location6p22.1 (28249314 ~ 28270326) to Ensembl
Sequene Features : Isoforms 1, Variants 146, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.N/A .scavenger receptor activity
.sequence-specific DNA binding transcription factor activity
.membrane
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 146 2
2014-09-19protein level
1 115 2
2014-05-27protein level
1 115 2
2014-02-25protein level
1 114 2
2013-12-09protein level
1 97 2
2013-11-01protein level
1 96 2
2013-09-12protein level
1 96 2
2013-08-17protein level
1 96 2
2013-07-15protein level
1 62 2
2013-06-11protein level
1 62 2
2013-02-12protein level
1 38 3
2012-12-20protein level
1 39 3
2012-10-30protein level
1 41 3
2012-10-07protein level
1 41 3
2012-08-24protein level
1 41 3
2012-07-28protein level
1 41 3
2012-06-08protein level
1 44 3
2012-05-07protein level
1 33 3
2012-04-10protein level
1 33 3
2012-01-13protein level
1 24 3
2011-12-20protein level
1 24 3
2011-11-11protein level
1 24 2
2011-08-23protein level
1 24 2
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q96JS3-1
35 0 0 92455.5229
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-10290053,EBI-10178224 ZSCAN22  
  .transcription, DNA-templated .metal ion binding
.sequence-specific DNA binding transcription factor activity
.DNA binding
.nucleus
2 EBI-10290053,EBI-707773 ZNF24  
  .negative regulation of transcription, DNA-templated
.myelination
.transcription, DNA-templated
.sequence-specific DNA binding
.zinc ion binding
.sequence-specific DNA binding transcription factor activity
.DNA binding
.nucleoplasm
.nucleus
3 EBI-10290053,EBI-721550 NR4A1  
  .phosphatidylinositol-mediated signaling
.neurotrophin TRK receptor signaling pathway
.positive regulation of transcription from RNA polymerase II promoter
  + 13 more...
.sequence-specific DNA binding
.zinc ion binding
.ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
  + 2 more...
.nuclear membrane
.cytoplasm
.nucleoplasm
.nucleus
4 EBI-10290053,EBI-745846 SCAND1  
  .transcription from RNA polymerase II promoter
.regulation of transcription from RNA polymerase II promoter
.identical protein binding
.transcription coactivator activity
.sequence-specific DNA binding transcription factor activity
.sequence-specific DNA binding RNA polymerase II transcription factor activity
.nucleus
5 EBI-10290053,EBI-355744 TRAF2  
  .positive regulation of extrinsic apoptotic signaling pathway
.regulation of extrinsic apoptotic signaling pathway via death domain receptors
.negative regulation of neuron death
  + 35 more...
.sphingolipid binding
.identical protein binding
.thioesterase binding
  + 10 more...
.IRE1-TRAF2-ASK1 complex
.TRAF2-GSTP1 complex
.membrane raft
  + 7 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland30
blood16
bone13
bone marrow20
brain14
cervix41
connective tissue26
embryonic tissue14
esophagus148
eye23
heart22
intestine4
kidney14
liver19
lung8
mammary gland6
muscle28
pancreas9
prostate15
skin4
spleen18
stomach10
testis4
thymus12
umbilical cord145
uterus17
Health State
TissuesTPM*
normal14
cervical tumor28
chondrosarcoma12
esophageal tumor173
germ cell tumor11
kidney tumor14
leukemia21
liver tumor31
non-neoplasia41
primitive neuroectodermal tumor of the CNS7
soft tissue/muscle tissue tumor39
Developmental Stage
TissuesTPM*
adult8
blastocyst16
neonate64
fetus12
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue2.3
adrenal gland1.8
appendix1.8
cerebral cortex4.1
colon1.7
duodenum1.2
esophagus2.1
gallbladder2
heart muscle1.9
kidney2.2
liver1.2
lung2.7
lymph node1.6
ovary2.4
placenta1.4
prostate2.6
salivary gland1.1
skin1
small intestine1.4
spleen2.1
stomach1.2
testis2.7
thyroid gland1.2
urinary bladder2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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