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> Protein (NX_Q96M95)
Protein (NX_Q96M95)
Protein
Gene SymbolCCDC42 to neXtProt (NX_Q96M95)
DescriptionCoiled-coil domain-containing protein 42A
Chromosome17
Location17p13.1 (8633252 ~ 8648537) to Ensembl
Sequene Features : Isoforms 2, Variants 58, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.N/A .N/A .N/A
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01transcript level
2 58 0
2014-09-19transcript level
2 44 0
2014-05-27transcript level
1 44 0
2014-02-25transcript level
1 44 0
2013-12-09transcript level
1 34 0
2013-11-01transcript level
1 31 0
2013-09-12transcript level
1 31 0
2013-08-17transcript level
1 31 0
2013-07-15transcript level
1 20 0
2013-06-11transcript level
1 20 0
2013-02-12transcript level
1 18 0
2012-12-20transcript level
1 19 0
2012-10-30transcript level
1 22 0
2012-10-07transcript level
1 22 0
2012-08-24transcript level
1 17 0
2012-07-28transcript level
1 17 0
2012-06-08transcript level
1 19 0
2012-05-07transcript level
1 19 0
2012-04-10transcript level
1 19 0
2012-01-13transcript level
1 6 0
2011-12-20transcript level
1 6 0
2011-11-11transcript level
1 6 0
2011-08-23transcript level
1 6 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q96M95-1
4 11 0 37994.7367
NX_Q96M95-2
1 11 0 29007.213
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-747041,EBI-1105213 TFIP11  
  .biomineral tissue development
.RNA processing
.regulation of transcription, DNA-templated
  + 2 more...
.DNA binding .catalytic step 2 spliceosome
.U2-type post-mRNA release spliceosomal complex
.nuclear speck
  + 3 more...
2 EBI-747041,EBI-10172526 MID2  
  .negative regulation of viral release from host cell
.positive regulation of NF-kappaB transcription factor activity
.positive regulation of sequence-specific DNA binding transcription factor activity
  + 6 more...
.phosphoprotein binding
.protein heterodimerization activity
.protein homodimerization activity
  + 3 more...
.extracellular exosome
.microtubule
.cytoplasm
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
brain4
connective tissue6
prostate5
testis80
Health State
TissuesTPM*
normal7
germ cell tumor11
soft tissue/muscle tissue tumor7
Developmental Stage
TissuesTPM*
adult3
fetus1
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
testis76.1
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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