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> Protein (NX_Q96SI9)
Protein (NX_Q96SI9)
Protein
Gene SymbolSTRBP to neXtProt (NX_Q96SI9)
DescriptionSpermatid perinuclear RNA-binding protein
Chromosome9
Location9q33.3 (125871779 ~ 126030855) to Ensembl
Sequene Features : Isoforms 2, Variants 64, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.mechanosensory behavior
.spermatid development
.multicellular organismal development
.poly(A) RNA binding
.single-stranded RNA binding
.double-stranded RNA binding
.DNA binding
.microtubule cytoskeleton
.cytoplasm
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 64 3
2014-09-19protein level
2 49 3
2014-05-27protein level
2 49 4
2014-02-25protein level
2 47 3
2013-12-09protein level
2 43 3
2013-11-01protein level
2 42 1
2013-09-12protein level
2 42 1
2013-08-17protein level
2 42 1
2013-07-15protein level
2 28 1
2013-06-11protein level
2 28 1
2013-02-12protein level
2 7 6
2012-12-20protein level
2 7 6
2012-10-30protein level
2 8 6
2012-10-07protein level
2 8 3
2012-08-24protein level
2 3 3
2012-07-28protein level
2 3 3
2012-06-08protein level
2 5 3
2012-05-07protein level
2 5 3
2012-04-10protein level
2 5 3
2012-01-13protein level
2 8 3
2011-12-20protein level
2 8 3
2011-11-11protein level
2 8 3
2011-08-23protein level
2 8 3
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q96SI9-1
0 35 3 73605.6491
NX_Q96SI9-2
0 35 3 71920.8325
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-740355,EBI-7875264 DAB1  
  .lateral motor column neuron migration
.Golgi localization
.negative regulation of axonogenesis
  + 15 more...
.N/A .perinuclear region of cytoplasm
.apical part of cell
.neuronal cell body
  + 5 more...
2 EBI-740355,EBI-978581 TARBP2  
  .negative regulation of defense response to virus by host
.regulation of viral transcription
.positive regulation of viral genome replication
  + 8 more...
.pre-miRNA binding
.protein homodimerization activity
.miRNA binding
  + 3 more...
.RISC-loading complex
.perinuclear region of cytoplasm
.micro-ribonucleoprotein complex
  + 5 more...
3 EBI-740355,EBI-740322 RBPMS  
  .positive regulation of SMAD protein import into nucleus
.positive regulation of pathway-restricted SMAD protein phosphorylation
.RNA processing
  + 2 more...
.poly(A) RNA binding
.poly(A) binding
.transcription coactivator activity
.nucleotide binding
.cytoplasm
.nucleoplasm
4 EBI-740355,EBI-741515 THAP1  
  .regulation of mitotic cell cycle
.cell cycle
.regulation of transcription, DNA-templated
  + 2 more...
.sequence-specific DNA binding
.identical protein binding
.zinc ion binding
.PML body
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland60
ascites75
bladder66
blood40
bone55
bone marrow20
brain21
connective tissue93
embryonic tissue56
eye52
heart11
intestine103
kidney9
liver29
lung2
lymph22
lymph node11
mammary gland13
muscle9
pancreas28
parathyroid48
pharynx24
pituitary gland60
placenta21
prostate47
salivary gland49
skin18
spleen37
testis75
thymus37
thyroid21
tonsil117
uterus4
Health State
TissuesTPM*
normal1
adrenal tumor79
bladder carcinoma56
breast (mammary gland) tumor21
chondrosarcoma36
colorectal tumor168
gastrointestinal tumor25
germ cell tumor72
head and neck tumor7
kidney tumor14
leukemia95
liver tumor20
lung tumor19
lymphoma27
non-neoplasia20
pancreatic tumor9
primitive neuroectodermal tumor of the CNS47
prostate cancer86
retinoblastoma86
skin tumor23
soft tissue/muscle tissue tumor127
uterine tumor11
Developmental Stage
TissuesTPM*
adult42
embryoid body71
blastocyst65
fetus1
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue4.6
adrenal gland5.8
appendix16.4
bone marrow10.9
cerebral cortex16
colon21.8
duodenum17.6
esophagus19
gallbladder8.9
heart muscle4.4
kidney12.3
liver5.1
lung8.8
lymph node36.2
ovary4
pancreas6.9
placenta6.4
prostate11.3
salivary gland15.8
skin5.6
small intestine16.1
spleen14.4
stomach13.9
testis49
thyroid gland20.2
urinary bladder11.2
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*611138, gene) Spermatid perinuclear rna-binding protein; STRBPOMIM


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