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> Protein (NX_Q9BUN5)
Protein (NX_Q9BUN5)
Protein
Gene SymbolCCDC28B to neXtProt (NX_Q9BUN5)
DescriptionCoiled-coil domain-containing protein 28B
Chromosome1
Location1p35.1 (32665987 ~ 32670988) to Ensembl
Sequene Features : Isoforms 2, Variants 25, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.cilium assembly .N/A .centrosome
.cytoplasm
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 25 3
2014-09-19protein level
2 24 3
2014-05-27protein level
2 24 3
2014-02-25protein level
2 24 3
2013-12-09protein level
2 18 3
2013-11-01protein level
2 17 3
2013-09-12protein level
2 17 2
2013-08-17protein level
2 17 2
2013-07-15protein level
1 10 1
2013-06-11protein level
1 10 1
2013-02-12protein level
1 6 1
2012-12-20protein level
1 6 1
2012-10-30protein level
1 6 1
2012-10-07protein level
1 6 1
2012-08-24protein level
1 6 1
2012-07-28protein level
1 6 1
2012-06-08protein level
1 6 1
2012-05-07protein level
1 2 1
2012-04-10protein level
1 2 1
2012-01-13protein level
1 2 1
2011-12-20protein level
1 2 1
2011-11-11protein level
1 2 1
2011-08-23protein level
1 2 1
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9BUN5-1
2 5 0 22022.9371
NX_Q9BUN5-3
3 5 0 26887.2747
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-10299032,EBI-747353 ATRIP  
  .DNA repair
.DNA replication
.DNA damage checkpoint
.K63-linked polyubiquitin binding .nucleoplasm
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
ascites50
blood24
bone69
brain13
embryonic tissue18
eye33
heart78
intestine8
kidney4
larynx42
liver19
lung23
lymph158
lymph node66
mammary gland6
muscle37
nerve64
ovary9
pancreas4
parathyroid194
pharynx24
placenta3
prostate26
skin9
testis45
thymus12
uterus12
vascular19
Health State
TissuesTPM*
normal18
breast (mammary gland) tumor10
chondrosarcoma12
gastrointestinal tumor16
germ cell tumor3
glioma55
head and neck tumor14
leukemia10
liver tumor20
lung tumor29
lymphoma96
pancreatic tumor9
primitive neuroectodermal tumor of the CNS15
prostate cancer9
retinoblastoma43
skin tumor7
soft tissue/muscle tissue tumor7
Developmental Stage
TissuesTPM*
adult16
embryoid body14
blastocyst16
fetus35
juvenile35
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue2.8
adrenal gland8.9
appendix7.4
bone marrow7
cerebral cortex6.7
colon3.2
duodenum2.5
esophagus3.9
gallbladder5.5
heart muscle12
kidney4.3
lung3.9
lymph node11.8
ovary4.7
pancreas2.9
placenta4.5
prostate5.7
salivary gland3
skin2.8
small intestine2.1
spleen5.9
stomach3.4
testis21.9
thyroid gland3.6
urinary bladder4.5
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(#209900, phenotype) Bardet-biedl syndrome; BBSOMIM
2(*610162, gene) Coiled-coil domain-containing protein 28b; CCDC28BOMIM


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