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> Protein (NX_Q9BXP5)
Protein (NX_Q9BXP5)
Protein
Gene SymbolSRRT to neXtProt (NX_Q9BXP5)
DescriptionSerrate RNA effector molecule homolog
Chromosome7
Location7q22.1 (100472733 ~ 100486285) to Ensembl
Sequene Features : Isoforms 5, Variants 116, PTMs 17 to neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.neuronal stem cell maintenance
.response to arsenic-containing substance
.primary miRNA processing
  + 3 more...
.poly(A) RNA binding
.DNA binding
.cytoplasm
.nucleoplasm
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
5 116 17
2014-09-19protein level
5 92 17
2014-05-27protein level
5 91 17
2014-02-25protein level
5 90 15
2013-12-09protein level
5 74 15
2013-11-01protein level
5 70 12
2013-09-12protein level
5 70 12
2013-08-17protein level
5 70 12
2013-07-15protein level
5 41 10
2013-06-11protein level
5 41 10
2013-02-12protein level
5 20 55
2012-12-20protein level
5 20 55
2012-10-30protein level
5 20 55
2012-10-07protein level
5 20 11
2012-08-24protein level
5 18 11
2012-07-28protein level
5 18 11
2012-06-08protein level
5 26 11
2012-05-07protein level
5 15 11
2012-04-10protein level
5 15 11
2012-01-13protein level
5 14 11
2011-12-20protein level
5 14 11
2011-11-11protein level
5 14 11
2011-08-23protein level
5 14 11
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9BXP5-1
0 38 0 100604.0205
NX_Q9BXP5-2
0 38 0 100213.7586
NX_Q9BXP5-3
0 37 0 100474.9782
NX_Q9BXP5-4
0 37 0 100084.7163
NX_Q9BXP5-5
1 35 0 96162.7246
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-712721,EBI-466029 HTT  
  .negative regulation of extrinsic apoptotic signaling pathway
.iron ion homeostasis
.L-glutamate import
  + 38 more...
.diazepam binding
.beta-tubulin binding
.dynein intermediate chain binding
  + 6 more...
.protein complex
.cytoplasmic vesicle membrane
.dendrite
  + 11 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
ascites225
bladder100
blood81
bone69
bone marrow61
brain69
cervix206
connective tissue46
ear62
embryonic tissue159
esophagus49
eye100
heart67
intestine90
kidney109
larynx85
liver77
lung128
lymph383
lymph node245
mammary gland165
mouth105
muscle65
ovary88
pancreas79
pituitary gland121
placenta67
prostate63
salivary gland49
skin85
spleen74
stomach41
testis117
thymus50
thyroid85
tonsil235
trachea19
uterus68
Health State
TissuesTPM*
normal74
bladder carcinoma113
breast (mammary gland) tumor75
cervical tumor173
chondrosarcoma144
colorectal tumor88
esophageal tumor57
gastrointestinal tumor109
germ cell tumor60
glioma205
head and neck tumor97
kidney tumor174
leukemia211
liver tumor135
lung tumor175
lymphoma249
non-neoplasia51
ovarian tumor91
pancreatic tumor47
primitive neuroectodermal tumor of the CNS118
prostate cancer28
retinoblastoma107
skin tumor119
soft tissue/muscle tissue tumor63
uterine tumor88
Developmental Stage
TissuesTPM*
adult98
embryoid body142
blastocyst276
fetus62
infant42
juvenile17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue33.8
adrenal gland39.1
appendix52.5
bone marrow89.3
cerebral cortex28.1
colon31.7
duodenum38.4
esophagus30.8
gallbladder36.8
heart muscle23
kidney30.8
liver22.4
lung41.4
lymph node68.1
ovary49.6
pancreas21
placenta38.3
prostate40.5
salivary gland43.7
skin68.2
small intestine38.6
spleen57.9
stomach39.1
testis129.6
thyroid gland34.5
urinary bladder37.2
Tissues
TissuesExpression level
adrenal glandHigh
appendixHigh
bone marrowHigh
breastHigh
bronchusHigh
cerebellumMedium
cerebral cortexHigh
cervix, uterineHigh
colonHigh
duodenumHigh
endometrium 1High
endometrium 2High
epididymisHigh
esophagusHigh
fallopian tubeHigh
gallbladderHigh
heart muscleMedium
hippocampusMedium
kidneyHigh
lateral ventricleMedium
liverMedium
lungMedium
lymph nodeHigh
nasopharynxHigh
oral mucosaHigh
ovaryMedium
pancreasHigh
parathyroid glandMedium
placentaHigh
prostateMedium
rectumHigh
salivary glandHigh
seminal vesicleHigh
skeletal muscleHigh
skin 1High
skin 2High
small intestineHigh
smooth muscleMedium
soft tissue 1Medium
soft tissue 2Medium
spleenHigh
stomach 1High
stomach 2High
testisHigh
thyroid glandHigh
tonsilHigh
urinary bladderHigh
vaginaHigh
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*614469, gene) Serrate rna effector molecule, arabidopsis, homolog of; SRRTOMIM


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