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> Protein (NX_Q9BXS0)
Protein (NX_Q9BXS0)
Protein
Gene SymbolCOL25A1 to neXtProt (NX_Q9BXS0)
DescriptionCollagen alpha-1(XXV) chain
Chromosome4
Location4q25 (109731877 ~ 110223813) to Ensembl
Sequene Features : Isoforms 3, Variants 104, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.collagen catabolic process
.extracellular matrix organization
.extracellular matrix disassembly
.heparin binding
.beta-amyloid binding
.integral component of membrane
.integral component of plasma membrane
.plasma membrane
  + 4 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 104 1
2014-09-19protein level
3 79 1
2014-05-27protein level
3 79 1
2014-02-25protein level
3 79 1
2013-12-09protein level
3 59 0
2013-11-01protein level
3 58 0
2013-09-12protein level
3 58 0
2013-08-17protein level
3 58 0
2013-07-15protein level
3 34 0
2013-06-11protein level
3 34 0
2013-02-12protein level
3 17 0
2012-12-20protein level
3 15 0
2012-10-30protein level
3 20 0
2012-10-07protein level
3 20 0
2012-08-24protein level
3 5 0
2012-07-28protein level
3 5 0
2012-06-08protein level
3 6 0
2012-05-07protein level
3 6 0
2012-04-10protein level
3 6 0
2012-01-13protein level
3 6 0
2011-12-20protein level
3 7 0
2011-11-11protein level
3 7 0
2011-08-23protein level
3 7 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9BXS0-1
1 31 1 64730.2794
NX_Q9BXS0-2
1 31 1 63620.9341
NX_Q9BXS0-3
2 27 1 57582.7148
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adrenal gland30
brain3
cervix41
embryonic tissue18
eye9
kidney9
muscle18
skin14
testis25
Health State
TissuesTPM*
normal6
adrenal tumor79
cervical tumor57
germ cell tumor7
kidney tumor29
skin tumor23
Developmental Stage
TissuesTPM*
adult2
embryoid body28
fetus12
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue6.2
cerebral cortex1.4
duodenum2.2
gallbladder3
kidney2.1
liver1.2
ovary1.2
prostate1.2
salivary gland4.2
small intestine2.1
testis10.7
thyroid gland3.1
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*610004, gene) Collagen, type xxv, alpha-1; COL25A1OMIM


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