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> Protein (NX_Q9H6Z4)
Protein (NX_Q9H6Z4)
Protein
Gene SymbolRANBP3 to neXtProt (NX_Q9H6Z4)
DescriptionRan-binding protein 3
Chromosome19
Location19p13.3 (5916150 ~ 5978153) to Ensembl
Sequene Features : Isoforms 3, Variants 57, PTMs 15 to neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.intracellular transport
.protein transport
.R-SMAD binding
.Ran GTPase binding
.cytoplasm
.nucleoplasm
.nucleus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 57 15
2014-09-19protein level
3 38 15
2014-05-27protein level
3 38 15
2014-02-25protein level
3 38 13
2013-12-09protein level
3 25 13
2013-11-01protein level
3 24 12
2013-09-12protein level
3 24 14
2013-08-17protein level
3 24 14
2013-07-15protein level
3 17 14
2013-06-11protein level
3 17 14
2013-02-12protein level
3 8 66
2012-12-20protein level
3 11 64
2012-10-30protein level
3 13 66
2012-10-07protein level
3 13 22
2012-08-24protein level
3 9 22
2012-07-28protein level
3 9 22
2012-06-08protein level
4 3 22
2012-05-07protein level
4 3 22
2012-04-10protein level
4 3 22
2012-01-13protein level
4 3 22
2011-12-20protein level
4 3 22
2011-11-11protein level
4 3 22
2011-08-23protein level
4 3 22
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9H6Z4-1
0 26 0 60173.0586
NX_Q9H6Z4-2
1 25 0 59657.8186
NX_Q9H6Z4-3
0 24 0 53377.8525
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-992681,EBI-992720 RCC1  
  .cell division
.spindle assembly
.positive regulation of GTPase activity
  + 6 more...
.histone binding
.nucleosomal DNA binding
.Ran guanyl-nucleotide exchange factor activity
.chromatin binding
.nuclear membrane
.cytoplasm
.nucleoplasm
  + 3 more...
2 EBI-992681,EBI-989143 PPM1A  
  .positive regulation of transcription, DNA-templated
.negative regulation of I-kappaB kinase/NF-kappaB signaling
.positive regulation of I-kappaB kinase/NF-kappaB signaling
  + 16 more...
.R-SMAD binding
.calmodulin-dependent protein phosphatase activity
.manganese ion binding
  + 3 more...
.neuron projection
.membrane
.voltage-gated calcium channel complex
  + 3 more...
3 EBI-992681,EBI-1040141 SMAD2  
  .positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry
.response to cholesterol
.SMAD protein signal transduction
  + 42 more...
.R-SMAD binding
.I-SMAD binding
.co-SMAD binding
  + 15 more...
.SMAD2-SMAD3 protein complex
.SMAD protein complex
.activin responsive factor complex
  + 6 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland60
ascites225
bladder66
blood73
bone167
bone marrow102
brain142
cervix20
connective tissue114
embryonic tissue79
esophagus99
eye86
heart111
intestine56
kidney90
larynx85
liver73
lung128
lymph node100
mammary gland59
mouth105
muscle28
nerve128
ovary108
pancreas79
placenta49
prostate52
salivary gland49
skin113
spleen74
stomach73
testis179
thymus263
tonsil58
trachea77
uterus94
vascular96
Health State
TissuesTPM*
normal99
adrenal tumor79
breast (mammary gland) tumor75
cervical tumor28
chondrosarcoma253
colorectal tumor35
esophageal tumor115
gastrointestinal tumor126
germ cell tumor159
glioma121
head and neck tumor74
kidney tumor130
leukemia84
liver tumor135
lung tumor116
lymphoma152
non-neoplasia175
ovarian tumor65
pancreatic tumor66
primitive neuroectodermal tumor of the CNS267
prostate cancer48
retinoblastoma129
skin tumor103
soft tissue/muscle tissue tumor55
uterine tumor33
Developmental Stage
TissuesTPM*
adult97
embryoid body100
blastocyst65
neonate96
fetus100
juvenile215
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue24
adrenal gland30.4
appendix32.2
bone marrow23.2
cerebral cortex30.7
colon24.3
duodenum20.9
esophagus25.1
gallbladder32.4
heart muscle27.6
kidney22
liver12.1
lung30.5
lymph node39.2
ovary31.3
pancreas16.2
placenta25.4
prostate33.2
salivary gland22.9
skin21.6
small intestine27
spleen34.6
stomach27.6
testis52.2
thyroid gland34.3
urinary bladder36.5
Tissues
TissuesExpression level
adrenal glandMedium
appendixMedium
bone marrowLow
breastMedium
bronchusMedium
cerebellumLow
cerebral cortexLow
cervix, uterineMedium
colonMedium
duodenumMedium
endometrium 1Medium
endometrium 2Medium
epididymisHigh
esophagusMedium
fallopian tubeMedium
gallbladderMedium
heart muscleMedium
hippocampusLow
kidneyMedium
lateral ventricleMedium
liverLow
lungMedium
lymph nodeMedium
nasopharynxLow
oral mucosaMedium
ovaryMedium
pancreasMedium
parathyroid glandMedium
placentaMedium
prostateMedium
rectumMedium
salivary glandMedium
seminal vesicleMedium
skeletal muscleMedium
skin 1Medium
skin 2Medium
small intestineMedium
smooth muscleLow
soft tissue 1Medium
soft tissue 2Medium
spleenLow
stomach 1Medium
stomach 2Medium
testisHigh
thyroid glandMedium
tonsilMedium
urinary bladderMedium
vaginaMedium
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*603327, gene) Ran-binding protein 3; RANBP3OMIM


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