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> Protein (NX_Q9H7V2)
Protein (NX_Q9H7V2)
Protein
Gene SymbolSYNDIG1 to neXtProt (NX_Q9H7V2)
DescriptionSynapse differentiation-inducing gene protein 1
Chromosome20
Location20p11.21 (24449835 ~ 24647252) to Ensembl
Sequene Features : Isoforms 1, Variants 71, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.synaptic vesicle clustering
.positive regulation of synapse assembly
.response to biotic stimulus
.intracellular protein transport
.protein homodimerization activity
.glutamate receptor binding
.excitatory synapse
.postsynaptic membrane
.cell body
  + 6 more...
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01transcript level
1 71 0
2014-09-19transcript level
1 53 0
2014-05-27transcript level
1 53 0
2014-02-25transcript level
1 52 0
2013-12-09transcript level
1 46 0
2013-11-01transcript level
1 44 0
2013-09-12transcript level
1 44 0
2013-08-17transcript level
1 44 0
2013-07-15transcript level
1 29 0
2013-06-11transcript level
1 29 0
2013-02-12transcript level
1 13 0
2012-12-20transcript level
1 12 0
2012-10-30transcript level
1 15 0
2012-10-07transcript level
1 15 0
2012-08-24transcript level
1 14 0
2012-07-28transcript level
1 14 0
2012-06-08transcript level
1 14 0
2012-05-07transcript level
1 10 0
2012-04-10transcript level
1 10 0
2012-01-13transcript level
1 2 0
2011-12-20transcript level
1 2 0
2011-11-11transcript level
1 2 0
2011-08-23transcript level
1 2 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9H7V2-1
12 0 0 28532.9395
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-726331,EBI-743099 FATE1  
  .N/A .N/A .integral component of membrane
.endoplasmic reticulum
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
brain66
embryonic tissue9
esophagus49
eye43
heart33
intestine8
kidney33
lung8
ovary59
pancreas9
prostate5
stomach20
testis4
thymus12
umbilical cord72
Health State
TissuesTPM*
normal27
esophageal tumor57
gastrointestinal tumor16
germ cell tumor26
glioma102
kidney tumor58
lung tumor9
non-neoplasia31
ovarian tumor78
retinoblastoma21
Developmental Stage
TissuesTPM*
adult16
embryoid body28
neonate32
fetus14
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue1.5
appendix1.3
cerebral cortex15.2
gallbladder8.8
heart muscle19.4
kidney6.1
lymph node1.6
prostate2.2
small intestine1.5
stomach1.1
thyroid gland4.3
urinary bladder2
Tissues
TissuesExpression level
colonLow
gallbladderMedium
heart muscleLow
kidneyMedium
lungLow
nasopharynxLow
oral mucosaLow
parathyroid glandLow
placentaMedium
rectumLow
skin 1Low
urinary bladderLow
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*614311, gene) Synapse differentiation-induced gene 1; SYNDIG1OMIM


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