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> Protein (NX_Q9HA65)
Protein (NX_Q9HA65)
Protein
Gene SymbolTBC1D17 to neXtProt (NX_Q9HA65)
DescriptionTBC1 domain family member 17
Chromosome19
Location19q13.33 (50380682 ~ 50392005) to Ensembl
Sequene Features : Isoforms 3, Variants 74, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.retrograde transport, endosome to Golgi
.protein transport
.autophagy
.GTPase activator activity .cytoplasmic vesicle
.cytosol
.autophagic vacuole
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 74 3
2014-09-19protein level
3 55 3
2014-05-27protein level
3 55 3
2014-02-25protein level
2 55 3
2013-12-09protein level
2 40 3
2013-11-01protein level
2 37 3
2013-09-12protein level
2 37 3
2013-08-17protein level
2 37 3
2013-07-15protein level
1 25 2
2013-06-11protein level
1 25 2
2013-02-12protein level
1 18 1
2012-12-20protein level
1 17 1
2012-10-30protein level
1 23 1
2012-10-07protein level
1 23 1
2012-08-24protein level
1 22 1
2012-07-28protein level
1 22 1
2012-06-08protein level
1 22 1
2012-05-07protein level
1 20 1
2012-04-10protein level
1 20 1
2012-01-13protein level
1 8 1
2011-12-20protein level
1 8 1
2011-11-11protein level
1 8 0
2011-08-23transcript level
1 8 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9HA65-1
0 25 0 72682.2514
NX_Q9HA65-2
0 23 0 68996.2315
NX_Q9HA65-3
1 23 0 67181.4515
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-714625,EBI-748974 OPTN  
  .Golgi ribbon formation
.defense response to Gram-negative bacterium
.negative regulation of I-kappaB kinase/NF-kappaB signaling
  + 10 more...
.K63-linked polyubiquitin binding
.identical protein binding
.polyubiquitin binding
  + 2 more...
.recycling endosome
.perinuclear region of cytoplasm
.cytoplasmic membrane-bounded vesicle
  + 8 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland333
ascites100
bladder66
blood139
bone69
brain140
cervix123
connective tissue107
embryonic tissue32
esophagus49
eye90
heart55
intestine43
kidney61
liver63
lung35
lymph22
lymph node100
mammary gland112
mouth45
muscle75
ovary137
pancreas70
parathyroid48
pituitary gland60
placenta134
prostate94
skin147
spleen243
stomach41
testis43
thymus276
thyroid107
tonsil58
trachea19
umbilical cord72
uterus81
vascular19
Health State
TissuesTPM*
normal98
adrenal tumor237
breast (mammary gland) tumor85
chondrosarcoma48
colorectal tumor8
gastrointestinal tumor126
germ cell tumor83
glioma167
head and neck tumor44
kidney tumor87
leukemia21
liver tumor135
lung tumor29
lymphoma41
non-neoplasia103
ovarian tumor131
pancreatic tumor57
primitive neuroectodermal tumor of the CNS173
prostate cancer38
retinoblastoma43
skin tumor127
soft tissue/muscle tissue tumor47
uterine tumor55
Developmental Stage
TissuesTPM*
adult89
embryoid body28
blastocyst65
neonate225
fetus57
infant42
juvenile89
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue24.4
adrenal gland26.4
appendix20.1
bone marrow9
cerebral cortex25.9
colon14.5
duodenum19
esophagus19
gallbladder22.8
heart muscle22.7
kidney23.1
liver15.2
lung26.3
lymph node21.8
ovary40
pancreas16.6
placenta22.5
prostate24.9
salivary gland23.2
skin38.9
small intestine20.8
spleen28.9
stomach19.6
testis15.6
thyroid gland28.2
urinary bladder22.9
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)


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