|
| Protein |
|
| Gene Symbol | CDH20 to neXtProt (NX_Q9HBT6) |
| Description | Cadherin-20 |
| Chromosome | 18 |
| Location | 18q21.33 (59000815 ~ 59223006) to Ensembl |
|
|
Sequene Features : Isoforms 1, Variants 155, PTMs 4 to neXtProt Sequence Features
|
|
Gene
Ontologies |
| GO: Biological Process |
GO: Mulecular Function |
GO: Cellular Component |
|
.homophilic cell adhesion via plasma membrane adhesion molecules |
.calcium ion binding |
.integral component of membrane
.plasma membrane |
|
|
| |
|
| Proteomic Evidences |
|
| |
|
| Release | | Protein Evidence | | Pr | | Ab | | Isoforms | | Variants | | PTMs |
|
| 2015-01-01 | | protein level | | | | | | | 1 |
| 155 |
| 4 |
|
| 2014-09-19 | | protein level | | | | | | | 1 |
| 109 |
| 4 |
|
| 2014-05-27 | | protein level | | | | | | | 1 |
| 109 |
| 4 |
|
| 2014-02-25 | | protein level | | | | | | | 1 |
| 109 |
| 4 |
|
| 2013-12-09 | | protein level | | | | | | | 1 |
| 94 |
| 4 |
|
| 2013-11-01 | | protein level | | | | | | | 1 |
| 88 |
| 4 |
|
| 2013-09-12 | | protein level | | | | | | | 1 |
| 88 |
| 4 |
|
| 2013-08-17 | | protein level | | | | | | | 1 |
| 88 |
| 4 |
|
| 2013-07-15 | | protein level | | | | | | | 1 |
| 63 |
| 4 |
|
| 2013-06-11 | | protein level | | | | | | | 1 |
| 63 |
| 4 |
|
| 2013-02-12 | | transcript level | | | | | | | 1 |
| 20 |
| 4 |
|
| 2012-12-20 | | transcript level | | | | | | | 1 |
| 20 |
| 4 |
|
| 2012-10-30 | | transcript level | | | | | | | 1 |
| 23 |
| 4 |
|
| 2012-10-07 | | transcript level | | | | | | | 1 |
| 23 |
| 4 |
|
| 2012-08-24 | | transcript level | | | | | | | 1 |
| 21 |
| 4 |
|
| 2012-07-28 | | transcript level | | | | | | | 1 |
| 21 |
| 4 |
|
| 2012-06-08 | | transcript level | | | | | | | 1 |
| 26 |
| 4 |
|
| 2012-05-07 | | transcript level | | | | | | | 1 |
| 23 |
| 4 |
|
| 2012-04-10 | | transcript level | | | | | | | 1 |
| 23 |
| 4 |
|
| 2012-01-13 | | transcript level | | | | | | | 1 |
| 16 |
| 4 |
|
| 2011-12-20 | | transcript level | | | | | | | 1 |
| 16 |
| 4 |
|
| 2011-11-11 | | transcript level | | | | | | | 1 |
| 16 |
| 4 |
|
| 2011-08-23 | | transcript level | | | | | | | 1 |
| 16 |
| 4 |
|
|
| |
|
| Protein Isoforms |
|
| |
| |
|
| : Uniquely mapped peptide | | : Gene-specific peptide | | : Shared peptide |
|
|
| |
|
| EST expression level of Protein Coding Gene (ref. NCBI UniGene EST) |
|
| |
|
| Body Sites | |
| Tissues | TPM* | |
|
| brain | 15 | |
| eye | 9 | |
| vascular | 19 | |
|
| Health State | |
| Tissues | TPM* | |
|
| normal | 4 | |
| germ cell tumor | 7 | |
| glioma | 18 | |
|
| Developmental Stage | |
| Tissues | TPM* | |
|
| fetus | 7 | |
|
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags. |
| |
|
| Expression level of Protein (ref. Human Protein Atlas) |
|
| |
|
| RNA-Seq. | |
| Tissues | FPKM | |
|
| adipose tissue | 4.2 | |
| cerebral cortex | 14.9 | |
| esophagus | 1 | |
|
| Cancer | |
| Tumor | Number of patients and Staining levels | |
| breast cancer | |
| carcinoid | |
| cervical cancer | |
| colorectal cancer | |
| endometrial cancer | |
| glioma | |
| head and neck cancer | |
| liver cancer | |
| lung cancer | |
| lymphoma | |
| melanoma | |
| ovarian cancer | |
| pancreatic cancer | |
| prostate cancer | |
| renal cancer | |
| skin cancer | |
| stomach cancer | |
| testis cancer | |
| thyroid cancer | |
| urothelial cancer | |
|
| RNA-seq colour codes |
|
|
Highly expressed RNAs (FPKM >50) | |
|
Moderately expressed RNAs (50> FPKM >10) | |
|
Lower expressed RNAs (10> FPKM >1) | |
|
The lowest expressed RNAs (FPKM value of 0 or 1) |
|
| Staining level colour codes |
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|
Highly expressed protein | |
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Moderately expressed protein | |
|
Lower expressed protein | |
|
Not Detected |
|
|
| |
|
| Disease |
|
| |
|
| No. | Disease Description | Ref. |
|
| 1 | (*605807, gene) Cadherin 20; CDH20 | OMIM |
|
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> Protein (NX_Q9HBT6)