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> Protein (NX_Q9HCJ6)
Protein (NX_Q9HCJ6)
Protein
Gene SymbolVAT1L to neXtProt (NX_Q9HCJ6)
DescriptionSynaptic vesicle membrane protein VAT-1 homolog-like
Chromosome16
Location16q23.1 (77822427 ~ 78014004) to Ensembl
Sequene Features : Isoforms 1, Variants 83, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.N/A .oxidoreductase activity
.zinc ion binding
.N/A
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 83 0
2014-09-19protein level
1 62 0
2014-05-27protein level
1 62 0
2014-02-25protein level
1 62 0
2013-12-09protein level
1 54 0
2013-11-01protein level
1 46 0
2013-09-12protein level
1 46 0
2013-08-17protein level
1 46 0
2013-07-15protein level
1 30 0
2013-06-11protein level
1 30 0
2013-02-12protein level
1 15 0
2012-12-20protein level
1 14 0
2012-10-30protein level
1 16 0
2012-10-07protein level
1 16 0
2012-08-24protein level
1 15 0
2012-07-28protein level
1 15 0
2012-06-08protein level
1 15 0
2012-05-07protein level
1 11 0
2012-04-10protein level
1 11 0
2012-01-13protein level
1 3 0
2011-12-20protein level
1 3 0
2011-11-11protein level
1 3 0
2011-08-23protein level
1 3 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9HCJ6-1
19 0 0 45870.0115
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-10234766,EBI-1993619 UBXN2B  
  .membrane fusion
.regulation of catalytic activity
.proteasome-mediated ubiquitin-dependent protein catabolic process
  + 3 more...
.ubiquitin binding
.protein phosphatase type 1 regulator activity
.cytosol
.Golgi apparatus
.endoplasmic reticulum
.nucleus
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland91
brain42
connective tissue6
ear124
embryonic tissue84
eye90
heart11
intestine4
lung8
nerve579
ovary49
pancreas46
placenta17
salivary gland148
testis18
uterus21
vascular19
Health State
TissuesTPM*
normal34
adrenal tumor79
germ cell tumor64
glioma46
head and neck tumor22
non-neoplasia10
pancreatic tumor28
primitive neuroectodermal tumor of the CNS15
Developmental Stage
TissuesTPM*
adult19
embryoid body28
blastocyst179
fetus14
infant42
juvenile161
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adrenal gland68.2
appendix3.5
cerebral cortex23.2
colon4.2
duodenum2.2
esophagus1.9
gallbladder5
heart muscle12.8
kidney4.1
placenta2.3
small intestine3.1
stomach1.7
testis2.2
thyroid gland1
urinary bladder1.3
Tissues
TissuesExpression level
adrenal glandLow
cerebral cortexLow
colonMedium
gallbladderLow
pancreasMedium
soft tissue 1Medium
soft tissue 2Medium
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Expression level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected


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