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> Protein (NX_Q9NPI8)
Protein (NX_Q9NPI8)
Protein
Gene SymbolFANCF to neXtProt (NX_Q9NPI8)
DescriptionFanconi anemia group F protein
Chromosome11
Location11p14.3 (22644079 ~ 22647387) to Ensembl
Sequene Features : Isoforms 1, Variants 44, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.activation of mitophagy in response to mitochondrial depolarization
.spermatogenesis
.DNA repair
.ovarian follicle development
.ubiquitin-protein transferase activity .Fanconi anaemia nuclear complex
.nucleoplasm
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
1 44 0
2014-09-19protein level
1 39 0
2014-05-27protein level
1 39 0
2014-02-25protein level
1 39 0
2013-12-09protein level
1 27 0
2013-11-01protein level
1 27 0
2013-09-12protein level
1 27 0
2013-08-17protein level
1 27 0
2013-07-15protein level
1 20 0
2013-06-11protein level
1 20 0
2013-02-12protein level
1 11 0
2012-12-20protein level
1 12 0
2012-10-30protein level
1 17 0
2012-10-07protein level
1 17 0
2012-08-24protein level
1 16 0
2012-07-28protein level
1 16 0
2012-06-08protein level
1 23 0
2012-05-07protein level
1 23 0
2012-04-10protein level
1 23 0
2012-01-13protein level
1 13 0
2011-12-20protein level
1 13 0
2011-11-11protein level
1 13 0
2011-08-23protein level
1 13 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9NPI8-1
20 0 0 42228.1238
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-81589,EBI-81610 FANCG  
  .response to radiation
.spermatid development
.mitochondrion organization
  + 3 more...
.damaged DNA binding .Fanconi anaemia nuclear complex
.plasma membrane
.mitochondrion
  + 3 more...
2 EBI-81589,EBI-81570 FANCA  
  .regulation of cell proliferation
.female gonad development
.male gonad development
  + 3 more...
.N/A .Fanconi anaemia nuclear complex
.cytoplasm
.nucleolus
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bladder33
blood40
bone27
bone marrow20
brain45
cervix82
connective tissue6
embryonic tissue14
esophagus49
eye19
heart11
intestine21
kidney9
liver14
lung20
lymph90
lymph node22
mammary gland26
mouth45
muscle37
pancreas23
prostate36
salivary gland49
skin37
spleen93
stomach31
testis50
thymus163
thyroid21
trachea19
uterus12
vascular38
Health State
TissuesTPM*
normal30
breast (mammary gland) tumor42
chondrosarcoma12
colorectal tumor17
esophageal tumor57
gastrointestinal tumor16
germ cell tumor60
glioma27
head and neck tumor29
kidney tumor14
liver tumor10
lung tumor19
lymphoma55
non-neoplasia20
pancreatic tumor19
primitive neuroectodermal tumor of the CNS31
retinoblastoma43
skin tumor31
uterine tumor22
Developmental Stage
TissuesTPM*
adult20
embryoid body14
blastocyst16
neonate96
fetus44
infant42
juvenile17
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue1.9
adrenal gland4.3
appendix6.2
bone marrow1.7
cerebral cortex3.4
colon6.1
duodenum7.8
esophagus3.3
gallbladder4
heart muscle3.1
kidney5.1
liver1.7
lung4
lymph node8.7
ovary6.2
pancreas3.9
placenta3
prostate5.3
salivary gland4.6
skin4.8
small intestine7.4
spleen6.3
stomach7
testis5.1
thyroid gland6.6
urinary bladder5.8
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Disease
No.Disease DescriptionRef.
1(#603467, phenotype) Fanconi anemia, complementation group f; FANCFOMIM
2(*613897, gene) Fancf gene; FANCFOMIM
3acute myelogenous leukemia;leukemia;Fanconi anaemia FCGP


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