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> Protein (NX_Q9NY93)
Protein (NX_Q9NY93)
Protein
Gene SymbolDDX56 to neXtProt (NX_Q9NY93)
DescriptionProbable ATP-dependent RNA helicase DDX56
Chromosome7
Location7p13 (44605016 ~ 44614650) to Ensembl
Sequene Features : Isoforms 2, Variants 63, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.RNA secondary structure unwinding
.rRNA processing
.poly(A) RNA binding
.ATP binding
.ATP-dependent RNA helicase activity
.membrane
.cytoplasm
.nucleolus
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
2 63 2
2014-09-19protein level
2 49 2
2014-05-27protein level
2 49 2
2014-02-25protein level
2 49 2
2013-12-09protein level
2 34 2
2013-11-01protein level
2 33 2
2013-09-12protein level
2 33 2
2013-08-17protein level
2 33 2
2013-07-15protein level
2 24 1
2013-06-11protein level
2 24 1
2013-02-12protein level
2 15 3
2012-12-20protein level
1 19 2
2012-10-30protein level
1 22 2
2012-10-07protein level
1 22 2
2012-08-24protein level
1 19 2
2012-07-28protein level
1 19 2
2012-06-08protein level
1 22 2
2012-05-07protein level
1 22 2
2012-04-10protein level
1 22 2
2012-01-13protein level
1 12 2
2011-12-20protein level
1 12 2
2011-11-11protein level
1 12 2
2011-08-23protein level
1 12 2
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9NY93-1
1 28 0 61550.7735
NX_Q9NY93-2
0 28 0 57238.5751
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland91
ascites225
bladder133
blood73
bone97
bone marrow184
brain138
cervix206
connective tissue80
embryonic tissue61
esophagus49
eye100
heart78
intestine211
kidney142
larynx42
liver73
lung113
lymph225
lymph node77
mammary gland152
mouth30
muscle28
nerve64
ovary78
pancreas32
pharynx24
pituitary gland60
placenta102
prostate63
salivary gland98
skin208
spleen93
stomach94
testis96
thymus100
thyroid343
trachea38
uterus103
vascular96
Health State
TissuesTPM*
normal85
adrenal tumor158
bladder carcinoma56
breast (mammary gland) tumor182
cervical tumor260
chondrosarcoma72
colorectal tumor168
esophageal tumor57
gastrointestinal tumor168
germ cell tumor125
glioma205
head and neck tumor141
kidney tumor217
leukemia190
liver tumor93
lung tumor214
lymphoma193
non-neoplasia93
ovarian tumor91
pancreatic tumor66
primitive neuroectodermal tumor of the CNS519
prostate cancer67
retinoblastoma129
skin tumor311
soft tissue/muscle tissue tumor135
uterine tumor88
Developmental Stage
TissuesTPM*
adult110
embryoid body42
blastocyst97
neonate64
fetus80
infant425
juvenile413
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue26.4
adrenal gland35.3
appendix34.4
bone marrow27.3
cerebral cortex23.7
colon26.1
duodenum37.1
esophagus31.4
gallbladder27
heart muscle20.4
kidney30.8
liver23.4
lung27.5
lymph node43.4
ovary36
pancreas18.3
placenta29.7
prostate29.8
salivary gland26.5
skin38.9
small intestine34.7
spleen37.6
stomach27.5
testis28.9
thyroid gland38.9
urinary bladder33.4
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*608023, gene) Dead/h box 56; DDX56OMIM


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