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| Protein |
|
| Gene Symbol | DDX56 to neXtProt (NX_Q9NY93) |
| Description | Probable ATP-dependent RNA helicase DDX56 |
| Chromosome | 7 |
| Location | 7p13 (44605016 ~ 44614650) to Ensembl |
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|
Sequene Features : Isoforms 2, Variants 63, PTMs 2 to neXtProt Sequence Features
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|
Gene
Ontologies |
| GO: Biological Process |
GO: Mulecular Function |
GO: Cellular Component |
|
.RNA secondary structure unwinding
.rRNA processing |
.poly(A) RNA binding
.ATP binding
.ATP-dependent RNA helicase activity |
.membrane
.cytoplasm
.nucleolus |
|
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| |
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| Proteomic Evidences |
|
| |
|
| Release | | Protein Evidence | | Pr | | Ab | | Isoforms | | Variants | | PTMs |
|
| 2015-01-01 | | protein level | | | | | | | 2 |
| 63 |
| 2 |
|
| 2014-09-19 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
|
| 2014-05-27 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
|
| 2014-02-25 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
|
| 2013-12-09 | | protein level | | | | | | | 2 |
| 34 |
| 2 |
|
| 2013-11-01 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
|
| 2013-09-12 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
|
| 2013-08-17 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
|
| 2013-07-15 | | protein level | | | | | | | 2 |
| 24 |
| 1 |
|
| 2013-06-11 | | protein level | | | | | | | 2 |
| 24 |
| 1 |
|
| 2013-02-12 | | protein level | | | | | | | 2 |
| 15 |
| 3 |
|
| 2012-12-20 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
|
| 2012-10-30 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
|
| 2012-10-07 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
|
| 2012-08-24 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
|
| 2012-07-28 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
|
| 2012-06-08 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
|
| 2012-05-07 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
|
| 2012-04-10 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
|
| 2012-01-13 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
|
| 2011-12-20 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
|
| 2011-11-11 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
|
| 2011-08-23 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
|
|
| |
|
| Protein Isoforms |
|
| |
| |
|
| : Uniquely mapped peptide | | : Gene-specific peptide | | : Shared peptide |
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|
| |
|
| EST expression level of Protein Coding Gene (ref. NCBI UniGene EST) |
|
| |
|
| Body Sites | |
| Tissues | TPM* | |
|
| adipose tissue | 77 | |
| adrenal gland | 91 | |
| ascites | 225 | |
| bladder | 133 | |
| blood | 73 | |
| bone | 97 | |
| bone marrow | 184 | |
| brain | 138 | |
| cervix | 206 | |
| connective tissue | 80 | |
| embryonic tissue | 61 | |
| esophagus | 49 | |
| eye | 100 | |
| heart | 78 | |
| intestine | 211 | |
| kidney | 142 | |
| larynx | 42 | |
| liver | 73 | |
| lung | 113 | |
| lymph | 225 | |
| lymph node | 77 | |
| mammary gland | 152 | |
| mouth | 30 | |
| muscle | 28 | |
| nerve | 64 | |
| ovary | 78 | |
| pancreas | 32 | |
| pharynx | 24 | |
| pituitary gland | 60 | |
| placenta | 102 | |
| prostate | 63 | |
| salivary gland | 98 | |
| skin | 208 | |
| spleen | 93 | |
| stomach | 94 | |
| testis | 96 | |
| thymus | 100 | |
| thyroid | 343 | |
| trachea | 38 | |
| uterus | 103 | |
| vascular | 96 | |
|
| Health State | |
| Tissues | TPM* | |
|
| normal | 85 | |
| adrenal tumor | 158 | |
| bladder carcinoma | 56 | |
| breast (mammary gland) tumor | 182 | |
| cervical tumor | 260 | |
| chondrosarcoma | 72 | |
| colorectal tumor | 168 | |
| esophageal tumor | 57 | |
| gastrointestinal tumor | 168 | |
| germ cell tumor | 125 | |
| glioma | 205 | |
| head and neck tumor | 141 | |
| kidney tumor | 217 | |
| leukemia | 190 | |
| liver tumor | 93 | |
| lung tumor | 214 | |
| lymphoma | 193 | |
| non-neoplasia | 93 | |
| ovarian tumor | 91 | |
| pancreatic tumor | 66 | |
| primitive neuroectodermal tumor of the CNS | 519 | |
| prostate cancer | 67 | |
| retinoblastoma | 129 | |
| skin tumor | 311 | |
| soft tissue/muscle tissue tumor | 135 | |
| uterine tumor | 88 | |
|
| Developmental Stage | |
| Tissues | TPM* | |
|
| adult | 110 | |
| embryoid body | 42 | |
| blastocyst | 97 | |
| neonate | 64 | |
| fetus | 80 | |
| infant | 425 | |
| juvenile | 413 | |
|
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags. |
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| Expression level of Protein (ref. Human Protein Atlas) |
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| RNA-Seq. | |
| Tissues | FPKM | |
|
| adipose tissue | 26.4 | |
| adrenal gland | 35.3 | |
| appendix | 34.4 | |
| bone marrow | 27.3 | |
| cerebral cortex | 23.7 | |
| colon | 26.1 | |
| duodenum | 37.1 | |
| esophagus | 31.4 | |
| gallbladder | 27 | |
| heart muscle | 20.4 | |
| kidney | 30.8 | |
| liver | 23.4 | |
| lung | 27.5 | |
| lymph node | 43.4 | |
| ovary | 36 | |
| pancreas | 18.3 | |
| placenta | 29.7 | |
| prostate | 29.8 | |
| salivary gland | 26.5 | |
| skin | 38.9 | |
| small intestine | 34.7 | |
| spleen | 37.6 | |
| stomach | 27.5 | |
| testis | 28.9 | |
| thyroid gland | 38.9 | |
| urinary bladder | 33.4 | |
|
| Cancer | |
| Tumor | Number of patients and Staining levels | |
| breast cancer | |
| carcinoid | |
| cervical cancer | |
| colorectal cancer | |
| endometrial cancer | |
| glioma | |
| head and neck cancer | |
| liver cancer | |
| lung cancer | |
| lymphoma | |
| melanoma | |
| ovarian cancer | |
| pancreatic cancer | |
| prostate cancer | |
| renal cancer | |
| skin cancer | |
| stomach cancer | |
| testis cancer | |
| thyroid cancer | |
| urothelial cancer | |
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| RNA-seq colour codes |
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Highly expressed RNAs (FPKM >50) | |
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Moderately expressed RNAs (50> FPKM >10) | |
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Lower expressed RNAs (10> FPKM >1) | |
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The lowest expressed RNAs (FPKM value of 0 or 1) |
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| Staining level colour codes |
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Highly expressed protein | |
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Moderately expressed protein | |
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Lower expressed protein | |
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Not Detected |
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| Disease |
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| No. | Disease Description | Ref. |
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| 1 | (*608023, gene) Dead/h box 56; DDX56 | OMIM |
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> Protein (NX_Q9NY93)