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Protein |
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Gene Symbol | DDX56 to neXtProt (NX_Q9NY93) |
Description | Probable ATP-dependent RNA helicase DDX56 |
Chromosome | 7 |
Location | 7p13 (44605016 ~ 44614650) to Ensembl |
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Sequene Features : Isoforms 2, Variants 63, PTMs 2 to neXtProt Sequence Features
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Gene Ontologies |
GO: Biological Process |
GO: Mulecular Function |
GO: Cellular Component |
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.RNA secondary structure unwinding .rRNA processing |
.poly(A) RNA binding .ATP binding .ATP-dependent RNA helicase activity |
.membrane .cytoplasm .nucleolus |
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Proteomic Evidences |
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Release | | Protein Evidence | | Pr | | Ab | | Isoforms | | Variants | | PTMs |
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2015-01-01 | | protein level | | | | | | | 2 |
| 63 |
| 2 |
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2014-09-19 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
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2014-05-27 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
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2014-02-25 | | protein level | | | | | | | 2 |
| 49 |
| 2 |
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2013-12-09 | | protein level | | | | | | | 2 |
| 34 |
| 2 |
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2013-11-01 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
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2013-09-12 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
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2013-08-17 | | protein level | | | | | | | 2 |
| 33 |
| 2 |
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2013-07-15 | | protein level | | | | | | | 2 |
| 24 |
| 1 |
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2013-06-11 | | protein level | | | | | | | 2 |
| 24 |
| 1 |
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2013-02-12 | | protein level | | | | | | | 2 |
| 15 |
| 3 |
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2012-12-20 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
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2012-10-30 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
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2012-10-07 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
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2012-08-24 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
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2012-07-28 | | protein level | | | | | | | 1 |
| 19 |
| 2 |
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2012-06-08 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
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2012-05-07 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
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2012-04-10 | | protein level | | | | | | | 1 |
| 22 |
| 2 |
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2012-01-13 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
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2011-12-20 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
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2011-11-11 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
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2011-08-23 | | protein level | | | | | | | 1 |
| 12 |
| 2 |
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Protein Isoforms |
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| : Uniquely mapped peptide | | : Gene-specific peptide | | : Shared peptide |
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EST expression level of Protein Coding Gene (ref. NCBI UniGene EST) |
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Body Sites | |
Tissues | TPM* | |
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adipose tissue | 77 | |
adrenal gland | 91 | |
ascites | 225 | |
bladder | 133 | |
blood | 73 | |
bone | 97 | |
bone marrow | 184 | |
brain | 138 | |
cervix | 206 | |
connective tissue | 80 | |
embryonic tissue | 61 | |
esophagus | 49 | |
eye | 100 | |
heart | 78 | |
intestine | 211 | |
kidney | 142 | |
larynx | 42 | |
liver | 73 | |
lung | 113 | |
lymph | 225 | |
lymph node | 77 | |
mammary gland | 152 | |
mouth | 30 | |
muscle | 28 | |
nerve | 64 | |
ovary | 78 | |
pancreas | 32 | |
pharynx | 24 | |
pituitary gland | 60 | |
placenta | 102 | |
prostate | 63 | |
salivary gland | 98 | |
skin | 208 | |
spleen | 93 | |
stomach | 94 | |
testis | 96 | |
thymus | 100 | |
thyroid | 343 | |
trachea | 38 | |
uterus | 103 | |
vascular | 96 | |
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Health State | |
Tissues | TPM* | |
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normal | 85 | |
adrenal tumor | 158 | |
bladder carcinoma | 56 | |
breast (mammary gland) tumor | 182 | |
cervical tumor | 260 | |
chondrosarcoma | 72 | |
colorectal tumor | 168 | |
esophageal tumor | 57 | |
gastrointestinal tumor | 168 | |
germ cell tumor | 125 | |
glioma | 205 | |
head and neck tumor | 141 | |
kidney tumor | 217 | |
leukemia | 190 | |
liver tumor | 93 | |
lung tumor | 214 | |
lymphoma | 193 | |
non-neoplasia | 93 | |
ovarian tumor | 91 | |
pancreatic tumor | 66 | |
primitive neuroectodermal tumor of the CNS | 519 | |
prostate cancer | 67 | |
retinoblastoma | 129 | |
skin tumor | 311 | |
soft tissue/muscle tissue tumor | 135 | |
uterine tumor | 88 | |
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Developmental Stage | |
Tissues | TPM* | |
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adult | 110 | |
embryoid body | 42 | |
blastocyst | 97 | |
neonate | 64 | |
fetus | 80 | |
infant | 425 | |
juvenile | 413 | |
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TPM*: Transcripts per million; transcript expression level measured by expression sequence tags. |
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Expression level of Protein (ref. Human Protein Atlas) |
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RNA-Seq. | |
Tissues | FPKM | |
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adipose tissue | 26.4 | |
adrenal gland | 35.3 | |
appendix | 34.4 | |
bone marrow | 27.3 | |
cerebral cortex | 23.7 | |
colon | 26.1 | |
duodenum | 37.1 | |
esophagus | 31.4 | |
gallbladder | 27 | |
heart muscle | 20.4 | |
kidney | 30.8 | |
liver | 23.4 | |
lung | 27.5 | |
lymph node | 43.4 | |
ovary | 36 | |
pancreas | 18.3 | |
placenta | 29.7 | |
prostate | 29.8 | |
salivary gland | 26.5 | |
skin | 38.9 | |
small intestine | 34.7 | |
spleen | 37.6 | |
stomach | 27.5 | |
testis | 28.9 | |
thyroid gland | 38.9 | |
urinary bladder | 33.4 | |
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Cancer | |
Tumor | Number of patients and Staining levels | |
breast cancer | |
carcinoid | |
cervical cancer | |
colorectal cancer | |
endometrial cancer | |
glioma | |
head and neck cancer | |
liver cancer | |
lung cancer | |
lymphoma | |
melanoma | |
ovarian cancer | |
pancreatic cancer | |
prostate cancer | |
renal cancer | |
skin cancer | |
stomach cancer | |
testis cancer | |
thyroid cancer | |
urothelial cancer | |
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RNA-seq colour codes |
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Highly expressed RNAs (FPKM >50) |
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Moderately expressed RNAs (50> FPKM >10) |
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Lower expressed RNAs (10> FPKM >1) |
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The lowest expressed RNAs (FPKM value of 0 or 1) |
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Staining level colour codes |
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Highly expressed protein |
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Moderately expressed protein |
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Lower expressed protein |
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Not Detected |
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Disease |
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No. | Disease Description | Ref. |
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1 | (*608023, gene) Dead/h box 56; DDX56 | OMIM |
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