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> Protein (NX_Q9P0W2)
Protein (NX_Q9P0W2)
Protein
Gene SymbolHMG20B to neXtProt (NX_Q9P0W2)
DescriptionSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
Chromosome19
Location19p13.3 (3572775 ~ 3579086) to Ensembl
Sequene Features : Isoforms 3, Variants 15, PTMsto neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.positive regulation of neuron differentiation
.skeletal muscle cell differentiation
.negative regulation of protein sumoylation
  + 6 more...
.chromatin binding
.DNA binding
.chromosome
.nucleoplasm
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
3 15 2
2014-09-19protein level
3 13 2
2014-05-27protein level
3 13 2
2014-02-25protein level
3 13 2
2013-12-09protein level
3 10 2
2013-11-01protein level
3 10 2
2013-09-12protein level
3 10 2
2013-08-17protein level
3 10 2
2013-07-15protein level
3 3 1
2013-06-11protein level
3 3 1
2013-02-12protein level
3 1 0
2012-12-20protein level
3 1 0
2012-10-30protein level
3 2 0
2012-10-07protein level
3 2 0
2012-08-24protein level
3 2 0
2012-07-28protein level
3 2 0
2012-06-08protein level
3 7 0
2012-05-07protein level
3 7 0
2012-04-10protein level
3 7 0
2012-01-13protein level
3 7 0
2011-12-20protein level
3 7 0
2011-11-11protein level
3 7 0
2011-08-23protein level
3 7 0
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9P0W2-1
1 14 0 35790.4422
NX_Q9P0W2-2
0 10 0 24697.5022
NX_Q9P0W2-3
0 13 0 32918.9218
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-713401,EBI-1047263 KRT38  
  .N/A .structural molecule activity .extracellular exosome
.intermediate filament
2 EBI-713401,EBI-739566 KRT15  
  .activation of mitophagy in response to mitochondrial depolarization
.epidermis development
.scaffold protein binding
.structural constituent of cytoskeleton
.extracellular exosome
.intermediate filament
.nucleus
3 EBI-713401,EBI-79792 BRCA2  
  .centrosome duplication
.replication fork protection
.positive regulation of mitotic cell cycle
  + 23 more...
.gamma-tubulin binding
.H4 histone acetyltransferase activity
.H3 histone acetyltransferase activity
  + 2 more...
.protein complex
.BRCA2-MAGE-D1 complex
.secretory granule
  + 4 more...
4 EBI-713401,EBI-6872807 SYCE1  
  .cell division
.synaptonemal complex assembly
.N/A .central element
5 EBI-713401,EBI-10171416 CCDC136  
  .N/A .N/A .integral component of membrane
.mitochondrion
6 EBI-713401,EBI-1105213 TFIP11  
  .biomineral tissue development
.RNA processing
.regulation of transcription, DNA-templated
  + 2 more...
.DNA binding .catalytic step 2 spliceosome
.U2-type post-mRNA release spliceosomal complex
.nuclear speck
  + 3 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
adipose tissue77
adrenal gland121
ascites426
blood24
bone237
bone marrow20
brain32
cervix82
connective tissue33
embryonic tissue79
eye220
heart22
intestine73
kidney109
larynx42
liver97
lung140
lymph112
lymph node66
mammary gland125
muscle28
ovary108
pancreas60
pituitary gland60
placenta63
prostate211
salivary gland296
skin446
spleen56
stomach83
testis36
thymus75
thyroid21
tonsil58
umbilical cord72
uterus133
Health State
TissuesTPM*
normal58
adrenal tumor316
breast (mammary gland) tumor118
cervical tumor115
chondrosarcoma241
colorectal tumor62
gastrointestinal tumor210
germ cell tumor98
glioma139
head and neck tumor59
kidney tumor145
leukemia42
liver tumor145
lung tumor107
lymphoma96
non-neoplasia41
ovarian tumor78
pancreatic tumor47
primitive neuroectodermal tumor of the CNS55
prostate cancer327
retinoblastoma43
skin tumor670
soft tissue/muscle tissue tumor87
uterine tumor166
Developmental Stage
TissuesTPM*
adult81
embryoid body42
blastocyst97
neonate32
fetus64
infant42
juvenile53
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue28.8
adrenal gland19.6
appendix20.4
bone marrow23.4
cerebral cortex9.1
colon31.5
duodenum29
esophagus22.9
gallbladder22.1
heart muscle12
kidney35.9
liver15.3
lung25.5
lymph node23.4
ovary16.9
pancreas13.3
placenta29.9
prostate64.7
salivary gland34.6
skin38.3
small intestine34.9
spleen31.2
stomach33.9
testis24.4
thyroid gland19.1
urinary bladder20.8
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Disease
No.Disease DescriptionRef.
1(*605535, gene) High mobility group protein 20b; HMG20BOMIM


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