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> Protein (NX_Q9UMZ2)
Protein (NX_Q9UMZ2)
Protein
Gene SymbolSYNRG to neXtProt (NX_Q9UMZ2)
DescriptionSynergin gamma
Chromosome17
Location17q12 (35874900 ~ 35969544) to Ensembl
Sequene Features : Isoforms 8, Variants 135, PTMs 20 to neXtProt Sequence Features
Gene
Ontologies
GO: Biological Process GO: Mulecular Function GO: Cellular Component
.endocytosis
.intracellular protein transport
.N/A .AP-1 adaptor complex
.Golgi apparatus
.cytoplasm
Proteomic Evidences
ReleaseProtein EvidencePrAbIsoformsVariantsPTMs
2015-01-01protein level
8 135 20
2014-09-19protein level
8 106 20
2014-05-27protein level
8 106 20
2014-02-25protein level
5 105 20
2013-12-09protein level
5 80 20
2013-11-01protein level
5 76 20
2013-09-12protein level
5 76 20
2013-08-17protein level
5 76 20
2013-07-15protein level
5 54 20
2013-06-11protein level
5 54 20
2013-02-12protein level
5 29 87
2012-12-20protein level
5 29 87
2012-10-30protein level
5 37 87
2012-10-07protein level
5 37 18
2012-08-24protein level
5 31 18
2012-07-28protein level
5 31 18
2012-06-08protein level
5 35 18
2012-05-07protein level
5 34 18
2012-04-10protein level
4 34 18
2012-01-13protein level
4 14 18
2011-12-20protein level
4 14 18
2011-11-11protein level
4 14 16
2011-08-23protein level
4 14 14
Protein Isoforms
Isoform Ac UGSMw (Da)
NX_Q9UMZ2-1
0 56 0 140565.5281
NX_Q9UMZ2-3
0 52 0 132569.7403
NX_Q9UMZ2-4
0 51 0 131138.9927
NX_Q9UMZ2-5
0 55 0 139134.7805
NX_Q9UMZ2-6
1 48 0 119433.2684
NX_Q9UMZ2-7
2 51 0 135368.0921
NX_Q9UMZ2-8
1 51 0 132498.7034
NX_Q9UMZ2-9
0 49 0 126134.6332
: Uniquely mapped peptide
: Gene-specific peptide
: Shared peptide
Interacting Partners
No. Exp. ref. Symbol   PE Pr Ab Di   GO: Biological Process GO: Mulecular Function GO: Cellular Component
1 EBI-7240490,EBI-743771 APPBP2  
  .intracellular transport
.metabolic process
.intracellular protein transport
.microtubule motor activity .cytoplasmic vesicle membrane
.microtubule associated complex
.microtubule
  + 2 more...
EST expression level of Protein Coding Gene (ref. NCBI UniGene EST)
Body Sites
TissuesTPM*
bladder33
blood65
bone13
bone marrow20
brain46
cervix20
connective tissue20
ear62
embryonic tissue32
eye71
heart78
intestine51
kidney99
liver24
lung116
lymph node222
mammary gland66
mouth90
muscle9
nerve64
ovary49
pancreas65
parathyroid48
pharynx49
pituitary gland60
placenta10
prostate21
skin14
spleen37
stomach20
testis55
thymus150
thyroid64
trachea57
uterus43
vascular19
Health State
TissuesTPM*
normal57
breast (mammary gland) tumor42
cervical tumor28
chondrosarcoma48
colorectal tumor35
gastrointestinal tumor33
germ cell tumor45
glioma27
head and neck tumor37
kidney tumor58
leukemia84
liver tumor20
lung tumor58
lymphoma27
non-neoplasia62
ovarian tumor52
pancreatic tumor76
primitive neuroectodermal tumor of the CNS15
retinoblastoma64
skin tumor7
soft tissue/muscle tissue tumor23
uterine tumor22
Developmental Stage
TissuesTPM*
adult47
blastocyst16
fetus71
TPM*: Transcripts per million; transcript expression level measured by expression sequence tags.
Expression level of Protein (ref. Human Protein Atlas)
RNA-Seq.
TissuesFPKM
adipose tissue10.4
adrenal gland13.9
appendix22.5
bone marrow8.5
cerebral cortex11.7
colon13.4
duodenum12.1
esophagus14.8
gallbladder16.7
heart muscle11.3
kidney14.3
liver6.3
lung12.8
lymph node31.7
ovary12.9
pancreas6.8
placenta11.7
prostate11.6
salivary gland9.1
skin9.3
small intestine13.4
spleen23
stomach15.6
testis30.6
thyroid gland16.8
urinary bladder18.4
Cancer
TumorNumber of patients and Staining levels
breast cancer
carcinoid
cervical cancer
colorectal cancer
endometrial cancer
glioma
head and neck cancer
liver cancer
lung cancer
lymphoma
melanoma
ovarian cancer
pancreatic cancer
prostate cancer
renal cancer
skin cancer
stomach cancer
testis cancer
thyroid cancer
urothelial cancer
RNA-seq colour codes
Highly expressed RNAs (FPKM >50)
Moderately expressed RNAs (50> FPKM >10)
Lower expressed RNAs (10> FPKM >1)
The lowest expressed RNAs (FPKM value of 0 or 1)
Staining level colour codes
Highly expressed protein
Moderately expressed protein
Lower expressed protein
Not Detected
Disease
No.Disease DescriptionRef.
1(*607291, gene) Adaptor-related protein complex 1 gamma subunit-binding protein 1;OMIM


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